Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq4 89.7 5e-13 >seq1 Length=677778 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | ||||| || ||||| || |||||||| Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542923 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||| |||||| |||||||||| || ||||| || || Sbjct 542924 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542983 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| ||||| | || | ||||| | ||||| ||| Sbjct 542984 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 543043 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || || |||||||| || || ||||| Sbjct 543044 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 >seq4 Length=775478 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | || || |||||||| || |||||||| | || || || Sbjct 281389 CAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATC 281330 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||| || || || |||| | |||||| ||||| || || || || || || || Sbjct 281329 TTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATC 281270 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| ||| || | | || | ||||||| ||||| ||||| | ||| | || Sbjct 281269 TTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGT 281210 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| || ||||||||||| || || || |||||| Sbjct 281209 CTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014152830480