Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4 141 7e-29 seq1 134 1e-26 >seq4 Length=775478 Score = 141 bits (156), Expect = 7e-29 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | |||||| |||||||| | ||||| || ||||| || |||||||| Sbjct 280948 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAG 280889 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || |||||||| || || || | || ||||| ||||| || |||| Sbjct 280888 AGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGA 280829 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 |||||||| || || ||| ||||| ||||||| |||| || || || | || ||| | Sbjct 280828 ATTCCTTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 280771 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 | || || || || || || ||||||| ||| || |||||||| |||||| ||| Sbjct 280770 CTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATAATTG 280717 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || || ||||| | ||||| |||||||| || |||||||| Sbjct 281403 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281344 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||||||| || || ||| | || ||||||||||| || |||| Sbjct 281343 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281284 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 ||||| || || || ||| ||||| ||| || | || || || || | || ||| | Sbjct 281283 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACGTTCTCAATTGTGTC-CGATGGTTCAA 281226 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || || || ||||||| ||||| |||||||| |||||| Sbjct 281225 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281176 >seq1 Length=677778 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || || || || | || || || ||||| || |||||||| | Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542923 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || ||||||| |||||||| ||||| | |||| ||| ||||| || ||| Sbjct 542924 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542983 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||| |||||| |||||| | || || || || | ||| || Sbjct 542984 ATACCTTCTTTGTCTTGAATCTTTGCT-TTTACATTCTCAATAGTGTCTGAAGGTTCAAC 543042 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || || || | ||||||||||||||| ||||| || Sbjct 543043 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 543093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179027851699