Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 210 5e-49 seq4 163 7e-35 seq30 123 6e-23 >seq1 Length=677778 Score = 210 bits (232), Expect = 5e-49 Identities = 188/236 (80%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || | ||| | || || ||||| || || |||||||| || |||||| Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542923 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| ||||||||||| | ||||||||||||||| || || | |||||||||||| || Sbjct 542924 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542983 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || |||||||||||||||||||| || | || || |||||| || Sbjct 542984 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 543043 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTAC 104568 || | ||| || ||||| ||||| | ||||||||||| |||||||| || | ||| Sbjct 543044 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTTCTCTAC 543099 >seq4 Length=775478 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| ||| || || || || || |||||||| || ||| Sbjct 280951 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 280892 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || |||| ||| || || ||||| |||| | |||||||||||| Sbjct 280891 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 280832 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| ||||||||||| ||||||||||| | || || ||||| Sbjct 280831 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 280772 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || || | || || ||||| |||||||| Sbjct 280771 ACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || | ||| | |||||| || || ||||| || ||||| || ||| Sbjct 281406 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281347 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||||| ||| || || || || |||| | ||||||||||| Sbjct 281346 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281287 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| || || || || | || || ||||| Sbjct 281286 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 281227 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 281226 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 >seq30 Length=890313 Score = 123 bits (136), Expect = 6e-23 Identities = 335/498 (67%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 269150 GCTGTAGAAGGTATATTCTTTTC-GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 ||||||||||| || | ||||| || |||||| ||||| |||||| | || || | Sbjct 147247 GCTGTAGAAGGAATTCTTTTTTCTGGTAGCTTTTG-TGCTATATTTTGGCTTAAAAAGCG 147189 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || |||||||| ||| | || |||||||| ||| | || ||| | || ||||| ||||| Sbjct 147188 TGGACTTATGCCTGGACTTACATTCTCTAATGAACTTATTAGCCGTGATGAAGGATTACA 147129 Query 269269 CTGC-GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAA--GA 269325 ||| ||||| ||||| ||| || ||| || |||| | | |||| | ||| Sbjct 147128 -TGCTGACTTTGCTTGCTTA--ATATAC-AAAGCTCTTAAATATAAAC--TACCAACTTC 147075 Query 269326 TAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGA 269382 ||||||| | ||||||| ||| ||||||| |||||||| | | ||||| || Sbjct 147074 TAGAGTACAACAAATTATCTCAGA---AGCTGTTGATGTAGAAAGAAACTTTCTTTGTGA 147018 Query 269383 AGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTT 269442 | || || | |||||||| || ||||| | | ||| |||||||| | || Sbjct 147017 CTCACTTCCTGTTGATCTTATTGGAATGAACTCTAGACTTATGGCTCAATATATTGAATT 146958 Query 269443 CGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCC 269502 ||| |||||||| | || | || | | | |||| || || ||| ||||| Sbjct 146957 TGTAGCTGATAGACTCCTTTTTGCTCTGGATATCCCCAAAATTTACAATGTTTCTAATCC 146898 Query 269503 GTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGT 269562 || || ||||| ||| ||| | ||||||| | |||||||| || ||| | || Sbjct 146897 CTTCGATTGGATGGATCTTATTTCACTCCAAGGTAAAACCAATTTCTTTGAAAAGAGAGT 146838 Query 269563 AAGTAACTATCAGAAAATG---GGTGTAATGTCTACTAAAGAAGA-AAATATTTTCACTA 269618 | | |||| ||||| || || ||| || | |||| || || | ||| ||| Sbjct 146837 CGGAGAATATC---AAATGGCTGGAGTTATGGTTAATCAAGATGACCAAAAGTTTGACT- 146782 Query 269619 CAGATGCAGAATTCTAAT 269636 ||||||||||||||||| Sbjct 146781 TAGATGCAGAATTCTAAT 146764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397824660612