Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq30 201 3e-46 >seq30 Length=890313 Score = 201 bits (222), Expect = 3e-46 Identities = 401/581 (69%), Gaps = 20/581 (3%) Strand=Plus/Minus Query 22430 CAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 || |||| || || ||||| ||||| ||||||||||| |||||| | || || || | Sbjct 147327 CAGTTAAAAAGAAAGCAGAATGGGCAACTAAATGGATGAATAATGAAAGATCTTTTGCTG 147268 Query 22490 AACGTCTTATTGCATTTGCTGTG--GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTG 22546 | | |||||| ||| ||||| || ||||| ||| | |||||||| ||| ||||||| Sbjct 147267 AGAGAATTATTGGATT--CTGTGCTGTAGAAGGAATTCTTTTTTCTGGTAGC-TTTTGTG 147211 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | || |||||||| ||||| |||| | ||||||| || || || || || ||||| | | Sbjct 147210 CTATATTTTGGCTTAAAAAGCGTGGACTTATGCCTGGACTTACATTCTCTAATGAACTTA 147151 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666 ||||||| ||||| || | ||| | || ||||| || | |||| || | | | Sbjct 147150 TTAGCCGTGATGAAGGATTACATGCTGACTTTGCTTGCTTAATATA---CAAAGCTCTTA 147094 Query 22667 TTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726 ||||||| ||| | | |||| | ||||| || | || ||||| | ||| Sbjct 147093 AATATAAACTACCAACTTCTAGAGTACAACAAATTATCTCAGAAGCTGTTGATGTAGAAA 147034 Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGA 22786 | ||| |||| || | | || || ||| ||||| || || | | ||| Sbjct 147033 GAAACTTTCTTTGTGACTCACTTCCTGTTGATCTTATTGGAATGAACTCTAGACTTATGG 146974 Query 22787 GTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCAT 22845 | ||||||| ||||||| || ||| | || | || | || || ||| | || | Sbjct 146973 CTCAATATATTGAATTTGTAGCTGATAGACTCCTTTTTGCTCT-GGATATCCCCAAAATT 146915 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || || || |||||| || || |||||||| ||||||||||| |||| || |||||| Sbjct 146914 TACAATGTTTCTAATCCCTTCGATTGGATGGATCTTATTTCACTCCAAGGTAAAACCAAT 146855 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGAT 22965 ||||| ||||| ||||| || ||||| |||| || || ||||||| | | | || ||| Sbjct 146854 TTCTTTGAAAAGAGAGTCGGAGAATATCAAATGGCTGGAGTTATGGTT--AATCAA-GAT 146798 Query 22966 AGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAATT 23006 | ||||| | || || ||||||| |||||| ||||| Sbjct 146797 -GACCAAAA----GTTTGAC-TTAGATGCAGAATTCTAATT 146763 Score = 178 bits (196), Expect = 3e-39 Identities = 575/883 (65%), Gaps = 10/883 (1%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || | || || ||| | ||||| | ||| || |||||| |||||| ||| Sbjct 424784 ATTGTAGAGAGACCACAACATCTTCTAATGAGAGTTTCTTGTGGTATACATTGCGGTGAT 424843 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-ACGCACGCCAC 363560 | || || || | ||||||||||| || | | || ||||| || || || || Sbjct 424844 ATCGAGGCTGCACTCGAAACATATAAA-TTATTATCGCAAAAGTATTTTACCCATGCTAC 424902 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 || || | | ||| | || |||| | || || ||||| ||||| ||| | || | Sbjct 424903 ACCTACGCTTTTCAACTCCGGCACTCCAAGACCTCAAATGTCATCTTGTTTTTTACTCAG 424962 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 ||| || ||||| || || ||||| |||||||| || | || ||||| |||| Sbjct 424963 AATACCAGAGGATTCTATAGATGGTATTTTTGACACGCTAACAAAATGTGCAAATATTAG 425022 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACAT 363740 |||| ||| ||||| |||| || | | ||| || | | | | | || || Sbjct 425023 TAAGACTGCCGGCGGTCTTGGAGTGGCAGTGAGTAATATTAGAGGAACGGGCTCGTATAT 425082 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || || ||| || ||||| ||| |||| ||| | || || | | | |||| Sbjct 425083 TCGGGGTACCAATGGAAGGTCTAATGGACTGATTCCAATGTTACGCGTTTATAATGATAC 425142 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| || || | ||||| |||||||| || ||||| || ||| |||| || ||| | || Sbjct 425143 TGCTAGATATATTGACCAAGGTGGAGGGAAACGCAAGGGTGCGATTGCAATTTATTTGGA 425202 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGA 363920 ||| |||| ||| || | |||||| |||| | | || || ||||||||||| Sbjct 425203 GCCGTGGCATGTAGATGTTGTGGAGTTTATTGAAATAAGAAAGAATCATGGAAAAGAGGA 425262 Query 363921 ATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 || | ||| ||||| || || ||| ||||||||| |||| | |||||| || | | Sbjct 425263 GATGAGATGC-CGTGACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGG 425321 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC--GA 364037 | ||| || | ||||| | || | || || | ||||| |||| || | || Sbjct 425322 TTGAGAAAGACCAAGATTGGACTCTTATGTGTCCGGATGAATG--CAGGGGGTTGCAAGA 425379 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 ||| |||||||| || | | ||||| ||| |||| ||| | |||| | | Sbjct 425380 TGTTTGGGGTGATGAGTTTAAGAAACTATATGAAGAGTACGAAAAGCAGGGCCGCGGAAG 425439 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 || || || || ||||| || |||||| ||| | | | || ||||| ||||| Sbjct 425440 AAAAACTATGAAGGCGCAGAAACTTTGGTTTTTAATCCTACAAGCTCAAATTGAAACAGG 425499 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTG 364216 ||| || | || | ||||| || | ||| || | ||| |||||| | | | | Sbjct 425500 AACGCCTTTCATCTGCTACAAGGACGC-TGCGAATAGTAAGAGTAACCAGAAAAATTTGG 425558 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || ||| || || |||| ||||| ||||| || ||||| | | || | Sbjct 425559 GGACTATTGTTTCCAGTAATTTATGCACCGAAATTATAGAGTACACTAGCGCAAATGAAA 425618 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 ||| || |||||||| ||||| || | |||||| |||||| Sbjct 425619 TTGCTGTTTGTAACCTGGCGTCCATTGGTCTTCCGAAGTTTGT 425661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352948730498