Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq30 246 4e-60 >seq30 Length=890313 Score = 246 bits (272), Expect = 4e-60 Identities = 1179/1856 (64%), Gaps = 40/1856 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 426555 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 426496 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 426495 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 426436 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 426435 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 426376 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 62088 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 426375 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 426316 Query 62089 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 426315 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 426256 Query 62147 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 62202 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 426255 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 426200 Query 62203 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 62262 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 426199 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 426140 Query 62263 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62322 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 426139 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 426080 Query 62323 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 62379 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 426079 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 426020 Query 62380 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62439 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 426019 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 425960 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 425959 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 425900 Query 62500 TTCGAAGATCTTCTTATTTAGAT--CTTGCGCTTCCAGGCTATCAAATGG-ATAATTTAA 62556 ||| || |||| |||||||| | || || |||| | | ||| |||| ||| || Sbjct 425899 TTCAAAAATCTCCTTATTTAATTTCCTAGC-CTTCTCTGAT-TCATATGGCATACG--AA 425844 Query 62557 G-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 | | ||||| ||||| | ||||||||||||||| || | || | |||| | || Sbjct 425843 GCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGAT 425784 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| | Sbjct 425783 TTGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCC 425724 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTA 62732 | ||| ||| | || ||||| | || ||| || ||| |||| | Sbjct 425723 TCGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGT 425664 Query 62733 CAAACATGTTCA-ATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 ||| | ||| | | ||| || ||||| |||||||| || | ||||| || | Sbjct 425663 CAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAG 425604 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 || | ||| || || ||||| | |||||| | || || || ||||||| || | Sbjct 425603 TGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGT 425544 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 ||||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 425543 TACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAG 425484 Query 62910 ATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CTT 62964 || || || ||| | | || | ||||| || || ||| || | Sbjct 425483 CTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCC 425428 Query 62965 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 | || ||||||| | ||| | | | ||||| || |||||||||| | || || Sbjct 425427 TGCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCC 425369 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 425368 CCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAA 425309 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| Sbjct 425308 TAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATG 425249 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 425248 ATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGC 425189 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 425188 AATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAAC 425129 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCAC 63323 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || Sbjct 425128 GCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCG 425070 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 | | | ||||||||| | || | || | || || || | ||| || ||| | Sbjct 425069 TTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCAC 425010 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 || | ||| ||| ||| | || || |||||| ||| || || | |||| ||||| Sbjct 425009 ATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAAC 424950 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | |||||||| | | ||| || | || || | ||||| | ||| || |||| Sbjct 424949 AAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAA 424890 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63563 | | |||| || | || || || || || | || | || ||||| | ||| | Sbjct 424889 AATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTA 424830 Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 | || | || | ||||| | || || ||||| || || |||||||| | ||| Sbjct 424829 TACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTC 424770 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 424769 TGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 424714 Score = 206 bits (228), Expect = 3e-48 Identities = 581/875 (66%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||| ||||| || || | ||||| || ||||| |||||||||| Sbjct 146810 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 146869 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | ||| ||| ||||| ||||||| ||||| | |||||| |||||||| | | Sbjct 146870 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 146929 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 146930 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 146989 Query 32537 CATTCCTATAAGTTTAACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 |||||| ||||| | ||| ||||| || |||| |||||| | | ||| | | || Sbjct 146990 CATTCCAATAAGATCAACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACA 147047 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTA 32651 || |||| ||||| | |||| | | | ||| | | || | | ||| Sbjct 147048 GCTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTG 147104 Query 32652 AACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 | || || || || || || ||| |||| || || || | ||||| | ||| || || Sbjct 147105 TATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGA 147163 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-C 32769 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | | | Sbjct 147164 GAATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTAC 147222 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 ||||||| | |||||||||||| || || |||||| |||||| || || | | Sbjct 147223 CAGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATC 147279 Query 32830 TGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | || || ||||| || ||||| || || |||||||| || || || Sbjct 147280 TTTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAG 147339 Query 32887 CTATAGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| | ||| || || | || ||| ||| || ||| |||| | ||||| Sbjct 147340 AAATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATT 147395 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 || | ||| |||| |||||| | ||||| |||||||||||| | || | | Sbjct 147396 AACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATT 147455 Query 33003 CTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 || || || | || |||| |||| || |||| | | || || ||||| | || || Sbjct 147456 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 147514 Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33121 || ||||| || ||||| || || | || | ||| ||||||| | | || ||| | Sbjct 147515 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 147572 Query 33122 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 147573 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 147632 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTC 33214 ||||| ||||| |||||||||||| ||| || || Sbjct 147633 GATGCTTCTGCTTTTTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631691104400