Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 145 7e-30 seq4 134 1e-26 >seq1 Length=677778 Score = 145 bits (160), Expect = 7e-30 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||||| || || || |||||||| | ||||| || | || Sbjct 543090 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 543031 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || ||||||| | ||| ||||||||||| || |||||||| Sbjct 543030 GACACTATTGAG--AATGTAAAAGCAAAGATTCAA-GACAAAGAAGGTATCCCACCTGAT 542974 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||||| ||||| | | | ||| | |||||| Sbjct 542973 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 542914 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || | || || || | || |||||||| || Sbjct 542913 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 542864 >seq4 Length=775478 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | ||||| || | || Sbjct 280722 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTTGAACCATCG 280781 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| | ||| || || ||||| ||||||||||| || Sbjct 280782 GACACAATTGAAAATGTAAAGGCAAAGATTCA-AGATAAGGAAGGAATTCCACCTGATCA 280840 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || |||||||| |||| | ||| | |||||||| Sbjct 280841 ACAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAA 280900 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || ||||| | |||||||| |||| || ||||| || Sbjct 280901 TATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAGACTCAGAGGTGG 280948 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || || | ||||| | ||||| || | || Sbjct 281177 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281236 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| |||| | ||| || || || || ||||||||||| || Sbjct 281237 GACACAATTGAGAACGTTAAGGCAAAGATTCAA-GATAAGGAGGGAATTCCACCTGATCA 281295 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || ||||||||||||| | ||| | |||||||| Sbjct 281296 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281355 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||| ||||| ||||||| || | || || ||||| |||| Sbjct 281356 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 281405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327794033785