Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 203 6e-47 seq1 154 3e-32 >seq4 Length=775478 Score = 203 bits (224), Expect = 6e-47 Identities = 186/235 (79%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| |||| || | ||| | ||||||||| |||| ||||||||||||||||| || | Sbjct 281411 TTTACATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGT 281352 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| || || || || ||||||||||| |||||||| ||||| || | | |||||| | Sbjct 281351 AATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGAT 281292 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | |||||||| || ||||| ||||||||||||||||| ||| ||| || ||||| | || Sbjct 281291 CAGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATG 281232 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| || ||||| || ||||| || | || ||||| || |||||||| Sbjct 281231 GTTCAACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||| ||||| || || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 280918 GTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCTAATTGCTTCCCT 280859 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | | ||||| || |||||||| |||||||| ||||||||||||||||| Sbjct 280858 GCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCCTTT 280799 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || || ||||| | || ||| |||||||| ||||| || ||||| || | ||| Sbjct 280798 ACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTC 280739 Query 68445 TTGACGAATATCTGCATTATGCTATT 68470 || || || |||||||| || |||| Sbjct 280738 TTAACAAAAATCTGCATAATTGTATT 280713 >seq1 Length=677778 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||||||||| | || ||||| ||||| || || ||||| || || ||||| || || Sbjct 542878 CAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTC 542937 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || || || || || || || || | ||||| || ||||| || ||||| ||||| Sbjct 542938 TTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC 542997 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||||||| || || ||| || ||||||| | ||| |||||||| |||||||| Sbjct 542998 TTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGT 543057 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | || || || || |||||||| Sbjct 543058 CTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621950709080