Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 seq1 132 1e-25 >seq4 Length=775478 Score = 134 bits (148), Expect = 3e-26 Identities = 171/234 (73%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | ||||| | ||| | ||| | ||| |||||||||||||| || Sbjct 281409 TACAT-TCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTA 281351 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 || | || || | ||| ||||||||||| || ||||||||||| | ||| |||||| Sbjct 281350 ATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATC 281291 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | ||| ||||| || ||||| || || || || || ||||| || || | || | Sbjct 281290 AGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGG 281231 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | ||||| ||||| || |||| || ||||| || |||||||| Sbjct 281230 TTCAACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 >seq1 Length=677778 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| || || | || || | |||||||| ||||||||||| || ||| Sbjct 542900 TCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAG 542959 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| | |||||| |||||||| || || || || ||||| || || Sbjct 542960 ATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTC 543019 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| ||||| | ||||| |||||||| || | ||| || || Sbjct 543020 TCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACA 543079 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 543080 AAAATCTGCAT 543090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653810541442