Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 seq4 84.2 2e-11 >seq1 Length=677778 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||| || | ||| | ||| || | |||||| || | | Sbjct 542897 GACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCA 542956 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| ||||||||||| || || || |||||||||||||| ||| | |||| ||||| Sbjct 542957 AAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC-TTGAATCTTTGCTTTTAC 543015 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | | || || || | || | || || ||||| | |||||| Sbjct 543016 ATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTT 543075 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 543076 TACAAAAATCTGCAT 543090 >seq4 Length=775478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 || |||||||| | | |||||||||||||| ||||| || | ||| | ||| Sbjct 280933 AAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCC 280874 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||| || || | | |||||| ||||||||| || || || || ||||| || || Sbjct 280873 TCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCT 280814 Query 138523 GTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| | |||| |||| | ||| | ||||| | | || || || | || | || Sbjct 280813 -TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGT 280755 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||| ||| || |||||||||||||| Sbjct 280754 CTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262158072080