Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 141 7e-29 seq1 134 1e-26 >seq4 Length=775478 Score = 141 bits (156), Expect = 7e-29 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| |||||||| | || || || ||||| || |||||||| | Sbjct 280948 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAG 280889 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || |||||||| || || || | || ||||||||||| || |||| Sbjct 280888 AGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGA 280829 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||||||||| || ||| ||||| |||||| |||| || || || | || ||| | Sbjct 280828 ATTCCTTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 280771 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || || || || || || ||||||| ||| || |||||||| |||||| ||| Sbjct 280770 CTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATAATTG 280717 Score = 122 bits (134), Expect = 6e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || || ||||| | || || |||||||| || |||||||| Sbjct 281403 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281344 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||||||| || || ||| | || ||||| ||||| || |||| Sbjct 281343 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281284 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||| ||||| || ||| ||||| || || | || || || || | || ||| | Sbjct 281283 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACGTTCTCAATTGTGTC-CGATGGTTCAA 281226 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || ||||||| ||||| |||||||| |||||| Sbjct 281225 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281176 >seq1 Length=677778 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || || || || | ||||| || ||||| || |||||||| Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542923 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || ||||||| |||||||| ||||| | |||| ||||||||| || ||| Sbjct 542924 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542983 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| ||| ||||||||| ||| | || ||||| || | ||| || Sbjct 542984 ATACCTTCTTTGTCTTGAATCTTTGCTTTT-ACATTCTCAATAGTGTCTGAAGGTTCAAC 543042 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || || | ||||||||||||||| ||||| || Sbjct 543043 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 543093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391830127115