Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq4 95.1 1e-14 >seq1 Length=677778 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || ||| ||||| || | |||||||| ||||||||||||||||| Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542923 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | || || | ||||||||||| |||||| ||||| ||||| || || Sbjct 542924 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542983 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| | | ||| || | | || | ||||| | | || || Sbjct 542984 ATACCTTCTTTGT-CTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 543042 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || | ||||||||||||||||||||| Sbjct 543043 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 >seq4 Length=775478 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | || ||| |||||||||| || ||||||||||| ||||||||||| Sbjct 281404 TCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGA 281345 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| |||| || || || ||| |||| || || || ||||| || || Sbjct 281344 AAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGG 281285 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||| | | ||| | | || ||| | | || | ||||||| || | Sbjct 281284 AATTCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAA 281226 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || |||| ||||| |||||||||||||| Sbjct 281225 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500568193360