Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq4 104 2e-17 >seq1 Length=677778 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || ||||| || | |||| || || |||||||| ||||| ||||| | || || Sbjct 542873 AGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTA 542932 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || |||||||||||||| || | |||| || || || || || || || |||||| Sbjct 542933 CCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCT 542992 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 || |||||||| ||| ||| | || | ||||| |||| || ||||| | || Sbjct 542993 TTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTG 543052 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || |||| ||||||||||||||| |||||| Sbjct 543053 ATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATC 543091 >seq4 Length=775478 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || || |||| ||||| || || |||||||| ||||| ||||| Sbjct 280951 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 280892 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || ||||| || ||||| | || || || || || || || Sbjct 280891 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 280832 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| ||| || | ||| | ||||| || | || Sbjct 280831 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 280772 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | ||| || |||||||| ||||| Sbjct 280771 ACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || ||||| || | ||| | || || || ||||||||||| ||||| Sbjct 281406 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281347 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || ||||| || |||||| | || || ||||| || || || Sbjct 281346 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281287 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||||| | |||| | | || | || | ||||| || | || Sbjct 281286 GGAATTCCCTCCTTATCTTGAA-TCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTC 281228 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | ||||| |||||||| ||||| Sbjct 281227 AACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002979648440