Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq4 93.3 3e-14 >seq1 Length=677778 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || |||||| |||||||| || ||||| ||||| ||||| | | | | | || Sbjct 542878 CAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTC 542937 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 ||||||||||| || |||| || | |||||| ||||| | || | ||||||||||| Sbjct 542938 TTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC 542997 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || ||| ||| | || | | ||||||| ||| || ||||| || || || Sbjct 542998 TTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGT 543057 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||||||||| || |||||||| Sbjct 543058 CTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 >seq4 Length=775478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || |||||||||||| || ||||| ||||| ||||| | | | | | |||| || Sbjct 280930 ACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCT 280871 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 ||||| ||||| |||| ||||||||||| ||||| | || | ||||| || || Sbjct 280870 AATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGA 280811 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || ||| || | | | | |||||| | ||| || |||||||| ||||| || Sbjct 280810 ATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTT 280751 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| || || || |||||||| Sbjct 280750 CCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369434890887