Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-40 seq30 170 4e-37 seq4 167 5e-36 >seq1 Length=677778 Score = 181 bits (200), Expect = 2e-40 Identities = 187/242 (77%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||||| ||||||||| || | ||||| || || ||||||| ||| ||| || ||| Sbjct 542853 GTTCAATAACACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGA-ATA 542911 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || |||||||||| || | | || ||||||||||| ||||||||||| | | |||| Sbjct 542912 TTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGT 542971 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||||||||| || |||||||| ||||| || || ||||||||| |||| ||| Sbjct 542972 TGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCT 543031 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||| ||||| | || ||||| || |||||||| ||||| | ||| |||||||| Sbjct 543032 GAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATC 543091 Query 192538 TT 192539 || Sbjct 543092 TT 543093 >seq30 Length=890313 Score = 170 bits (188), Expect = 4e-37 Identities = 481/727 (66%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| ||||||||||||| |||||| | ||| | | | | ||||| || ||||| | Sbjct 146945 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCC-AATAAGAT 147003 Query 49712 AAATGGTAA-TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 || | || || ||| || ||| | | |||||| || ||||||| | || || Sbjct 147004 CAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT-- 147061 Query 49771 taattatattatttt--ttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || || | | ||| || ||||||||||| | | || | |||||||| || || Sbjct 147062 TTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGA-GCTTTG--TATATTAAGCAAGC 147118 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||| |||| |||||| || || || | |||| ||||||| || || | ||| || Sbjct 147119 AAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 147178 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| | ||| | |||||||||||||||||| | ||| |||| |||||| | || || Sbjct 147179 CATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCC 147238 Query 49949 CTCGACA-CACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-ATC 50006 || ||| ||| ||| | || ||||| | |||| || | |||| || | ||| Sbjct 147239 TTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAA---AGATCTTTCAT-TATTCATC 147293 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 || || | ||||| |||||||| ||||| | | || |||| ||||| | || Sbjct 147294 CATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAA-- 147351 Query 50067 AATTCAttt--ttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 || ||||| ||| | ||||| || ||||| ||| Sbjct 147352 AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTT 147411 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT-GAATAC 50183 || ||| | || ||||| |||||||||| |||| | |||||||||| | ||| Sbjct 147412 CATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA- 147470 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 || | ||| | ||| || | || || || |||||||||||| || || Sbjct 147471 TGTATTTCTCTTAGGAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCA 147530 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303 ||||| |||| |||||||||||||||||| | ||| ||||| | | |||||||| | Sbjct 147531 AAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATCT 147590 Query 50304 TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 | ||| |||| ||| || | ||||| | |||||| |||||| | | ||||| Sbjct 147591 CTAGTATC--TTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTT 147648 Query 50362 TATACAT 50368 ||||||| Sbjct 147649 TATACAT 147655 >seq4 Length=775478 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| || | ||| |||||||| ||||| | ||| ||| || ||||| ||||| Sbjct 280951 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGA-ATATTGTAATC 280893 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| || ||||| || || ||||||||||| | |||||||||||| Sbjct 280892 AGAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGG 280833 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| || || |||||||| || | || || | ||| Sbjct 280832 TGGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTC 280773 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| ||| |||||||| Sbjct 280772 AACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | ||||| ||||||||||| | |||||| |||||| |||||| Sbjct 281406 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281347 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || ||||| || || || |||||||| | |||||||||||| Sbjct 281346 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281287 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || || || || | || || | ||| Sbjct 281286 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 281227 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 281226 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479508067650