Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 174 3e-38 seq4 154 3e-32 seq30 123 5e-23 >seq1 Length=677778 Score = 174 bits (192), Expect = 3e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| ||||||||| |||| ||||| || || ||||||| ||| || |||||| ||| Sbjct 542858 ATAACACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAA 542917 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || | |||| ||||||||||| |||||||| || | | |||||| ||| Sbjct 542918 TCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCA 542977 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| || || ||||||||| ||||| ||||| | | Sbjct 542978 GGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGT 543037 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | || ||||| || |||||||| ||||| | || |||||||| || Sbjct 543038 TCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 543093 >seq4 Length=775478 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||| ||||| | ||| || |||||| ||||| Sbjct 280951 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 280892 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || ||||| ||||| | |||||| |||||| Sbjct 280891 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 280832 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || |||||||| || || || || | ||| Sbjct 280831 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 280772 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 280771 ACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||||| ||||| ||||||||||| | |||||| ||||| ||||| Sbjct 281406 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281347 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || || || ||||| | ||||| |||||| Sbjct 281346 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281287 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || || || || || || || | ||| Sbjct 281286 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 281227 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || || || || || |||||||| | || |||||||| Sbjct 281226 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 >seq30 Length=890313 Score = 123 bits (136), Expect = 5e-23 Identities = 341/510 (67%), Gaps = 16/510 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| ||||| ||| | ||||| || || || ||||| |||| | ||| || | || Sbjct 146824 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 146883 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| |||| || ||||| ||| ||| ||||| |||| | | || | | Sbjct 146884 CCATCCAATCGAAGGGATTAGAAACATTGTAA-ATTTTGGGGATATCCAGAGCAAAAAGG 146942 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 | |||||| || |||||||||| |||||| ||| | | | | ||||| || ||||| Sbjct 146943 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCC-AATAAG 147001 Query 39012 TTAAATGGTAA-TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | || | || || ||| || ||| | | |||||| || ||||||| | || || Sbjct 147002 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 147061 Query 39071 cataattatattatttt--ttgataatttatatttaatatgattcgcatataGTAAACAT 39128 | || || | | ||| || ||||||||||| | | || | |||| ||| || Sbjct 147062 --TTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGA-GCTTTGTATAT--TAAGCAA 147116 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 ||||| || | |||||| ||||| || | |||| ||||||| || || | ||| Sbjct 147117 GCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCA 147176 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| | ||| | |||||||||||||||||| | ||| |||| |||||| | || Sbjct 147177 GGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATT 147236 Query 39249 CCCTCCACA-CACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || ||| ||| ||| | || ||||| | |||| || | |||| || Sbjct 147237 CCTTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAA---AGATCTTTCATTATTCAT 147292 Query 39308 CCAATTTATGGCCCAATCTGCttttttttt 39337 ||| || | ||||| |||||||| ||||| Sbjct 147293 CCATTTAGTTGCCCATTCTGCTTTCTTTTT 147322 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 39441 TCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA-ATACTGAACTTCGGAAAA 39499 || ||||| |||||||||| |||| | |||||||||| ||| || | ||| | Sbjct 147426 TCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA-TGTATTTCTCTTAG 147484 Query 39500 GAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAAC 39559 ||| || | || || || |||||||||||| || || ||||| |||| || Sbjct 147485 GAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAAAGAAAGCTAGGAC 147544 Query 39560 ATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGA 39619 ||||||||||||||| | ||| ||||| | | |||||||| | | ||| |||| Sbjct 147545 GTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATC--TTGA 147602 Query 39620 --TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACAT 39670 ||| || | ||||| | |||||| |||||| | | |||||||||||| Sbjct 147603 CTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTTTATACAT 147655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135558746200