Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq30 147 6e-30 seq3 123 7e-23 seq13 89.7 2e-12 >seq30 Length=890313 Score = 147 bits (162), Expect = 6e-30 Identities = 674/1049 (64%), Gaps = 40/1049 (4%) Strand=Plus/Minus Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATACCT-TGGTTACGTCTGCTAATTTCACAT 155547 ||||| ||| || |||||||| | |||| || | || || || ||| || || Sbjct 425746 ATCAACAATTTTGTTTAAATTCCTCGT-AATAACTCTCGTAACTTCCTTTAACTTATCAA 425688 Query 155548 AGTCAAATGTTTTATCCTCATTT---ACAAACATACCAAGACCAATAGACGCCAGATTAC 155604 |||| |||||||| | || || |||||| | ||||||||| |||||||| |||| Sbjct 425687 AGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTAC 425628 Query 155605 ATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTA--GAACT 155662 | || ||| | || || || |||| |||| ||| || ||| | ||| | | Sbjct 425627 AAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAA 425568 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 | || || || ||||| ||||||||| ||||| || ||| |||||||| || Sbjct 425567 CA--ATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGAT 425510 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 | | || |||||||| || || || || | || || | ||| || | | || || Sbjct 425509 GAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTT 425450 Query 155783 AATT-TGCTTGTT----GTATCTGCCTTCCG-ACTCATATTTCATATACAGCGTTCGGTA 155836 || | || || | |||| || || |||| |||||||| ||| || Sbjct 425449 CATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTC----TTCATATA----GTTTCTTA 425398 Query 155837 A--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAA 155894 | || ||||| || ||| || || ||| | ||| || || | || | |||| Sbjct 425397 AACTCATCACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAA 425338 Query 155895 ATTT--TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAA 155952 || | || | | || | ||||||||||| |||| |||||| ||| || | Sbjct 425337 TCTTGGTCTTTCTCA--ACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGA 425280 Query 155953 GGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 |||| | || | | | |||||| | || |||||||| | || || | || ||| || Sbjct 425279 GGTCAC-GGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACA 425221 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCC 156068 | ||| ||| ||||||| ||| || |||| ||| || | || ||||| Sbjct 425220 ACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCT 425161 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || | ||| | |||||| | ||| | || | || ||| ||||| | ||||| || Sbjct 425160 TGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGAC 425101 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | |||||||| || ||||||| ||| || | | | || |||| | | |||| Sbjct 425100 CTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCA 425041 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 | ||| || | ||| ||| | || |||| ||| || | |||||||| || Sbjct 425040 AGACCGCCGGCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCT 424981 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| ||| ||| |||| | | || || | |||||||| ||| || || Sbjct 424980 ATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCG 424921 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA-TCGTATGT 156367 | |||||| || |||||||| ||||| |||||||||| | || | |||| | ||||| Sbjct 424920 GAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATA-ATAATTTATATGT 424862 Query 156368 CTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 || | | | ||| | || | | || |||| ||| || ||||| | | Sbjct 424861 TTCGAGTGCAGC--CTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGA 424804 Query 156426 TGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTT 156485 || || || | |||||||||| |||||||| ||||| || | | ||| | |||| Sbjct 424803 TGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTT 424744 Query 156486 TTAAACCCGAAATAATCAAACAGAAAATC 156514 || || | ||||||||| | |||||| Sbjct 424743 TTGAATGCAAAATAATCATATTCAAAATC 424715 >seq3 Length=862862 Score = 123 bits (136), Expect = 7e-23 Identities = 346/524 (66%), Gaps = 23/524 (4%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 ||| |||||| || || | | |||||||| || ||||| | ||| | | || ||| Sbjct 743693 TCCGATCAAATCTTCCTGGCCTTGTTAATGCAGGATCTAAAACATCAGAACGATTAGTTC 743752 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| | | || |||||||| | ||| ||| Sbjct 743753 CTGCTAAAACTATTACTCCATTAT-TTTCCGTGAAGCCATCCATTTCAACAAGAATCTGA 743811 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCG--CTCCt-- 289022 ||||| || |||||| |||||||| || |||| || | |||| ||||| Sbjct 743812 TTAAGAGTACTTTCCCTCTCATCATTAGA------TGAAGCAGCA-AATCCACCTCCTCT 743864 Query 289023 ------ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTG 289076 |||| | ||||| ||||||||||| ||||| |||| | || ||||| | Sbjct 743865 AGCACGTTTTCTCCCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAACTT 743924 Query 289077 TCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 ||| || || ||||| ||||||||| | ||||| | |||||| | || || | Sbjct 743925 TCTTGCTTGTGAAAATAGTTCTCTTACTCTACTGGCTCCCATTCCAACAAAAATCTCAAT 743984 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 ||| ||| | || | | || || | |||||| ||||| || || || ||| | || Sbjct 743985 AAAATCACTTCCAGAAATATAAAAAAAAGGTACATTAGCTTCACCAGCAACAGCCTTTGC 744044 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 || | ||| || || || || |||||||| ||| |||| | || ||||||| |||||| Sbjct 744045 TAGTAATGTTTTGCCGGTACCTGGTGGTCCTACTAGTAGAGCACCTTTTGGTATTTTTGC 744104 Query 289257 CCCAGCAGA-CTTATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 ||| ||| ||| | || | ||| || ||||| ||||| || | ||| | | ||| Sbjct 744105 ACCA--AGATCTTGAAATTTTTTGGGATCTTTTAAGAATTCCACCAATTCATATATTTCT 744162 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 | ||| || || | ||| || | |||| ||| ||| ||| Sbjct 744163 TGTTTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAACATT 744206 >seq13 Length=714223 Score = 89.7 bits (98), Expect = 2e-12 Identities = 251/382 (66%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 || || || ||||| | || ||||| | |||||||| || || ||||| | |||||| Sbjct 709835 CCTGTTCCTATACCATCAGTACCATTAACTAGAATCATTGGAATGATTGGAACATAATAC 709894 Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCG 60109 | ||||||| | |||||||| | |||||| ||||| | || ||| ||| Sbjct 709895 AAAGGCTCAATCTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 709954 Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCG 60169 ||||||||| | ||| || |||| || || || ||||| | | | ||| Sbjct 709955 GGAAATATATATCTAGTCCATTTAGATAGTTTAGTAAATATATAACGAGCAGCACTTGCA 710014 Query 60170 TCCTTGCCACC---CATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 ||||| ||||| | | || | |||||||| || ||| | |||| ||| | Sbjct 710015 TCCTTTCCACCTTCCTTTCTAC---TACCAAATTGACCACATGGTTCTAATAAATTTAGA 710071 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTG--GCTT 60284 || || || || || |||||||| | | || |||| || ||| | || | || Sbjct 710072 TTATTGCTTCCAACAAAGTTTTGAGCCATATTTACTATAGTAC--TTTGTAGTGAAGATT 710129 Query 60285 CACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTT 60344 | ||||||||||| || |||||| | |||||| ||| |||||| | || |||| || Sbjct 710130 CTCCGTGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTACAACCTTAAGTT 710189 Query 60345 CGGAGTGGAGTTTTTTCTTGAA 60366 | | ||||| ||||| || Sbjct 710190 CATTATTAAGTTTCTTCTTAAA 710211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816864551143