Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq13 116 5e-21 >seq13 Length=714223 Score = 116 bits (128), Expect = 5e-21 Identities = 246/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Minus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAAC 166010 ||||||||| |||||| ||| |||||||| ||||| | | |||| | || || ||| Sbjct 710186 TTAAGGTTGTACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCACGGAGAAT 710127 Query 166011 AAAATTTATGTGAAA---CTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 166067 || | ||| ||||| | || | || ||| | |||||||| | |||||| Sbjct 710126 C---TTCACTACAAAGTACTATAGTAAATATGGCTCAAAACTTTGTTGGAAGCAATAATC 710070 Query 166068 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 166125 || ||| | ||||| |||||||||||||| ||| ||||| || || ||| | Sbjct 710069 TAAATTTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAGGAAGGTGGAAAGGATGCAA 710010 Query 166126 -TGCTGCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAG 166184 |||||| || | ||||| | ||| |||| | |||| | |||||||||| || Sbjct 710009 GTGCTGC-TC--GTTATATATTTACTAAACTATCTAAATGGACTAGATATATATTTCCAG 709953 Query 166185 AAGAAGATGACCCTATTTTAAATTA--TA-CTGTTGAGGG---------TGAACCTATTC 166232 ||| ||||| ||| | |||| ||| || || ||| || ||| ||| | Sbjct 709952 AAGCTGATGATCCTTTATTAACTTACTTATATGATGATGGACAACAGATTGAGCCTTTGT 709893 Query 166233 ATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 166292 ||| | ||||| | || ||| | ||| || |||||||| || |||||| |||||||||| Sbjct 709892 ATTATGTTCCAATCATTCCAATGATTCTAGTTAATGGTACTGATGGTATAGGAACAGGAT 709833 Query 166293 GG 166294 || Sbjct 709832 GG 709831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489291661320