Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq4 125 6e-24 >seq1 Length=677778 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| |||| || || || || || | ||||| ||| | | Sbjct 543091 GATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTC 543032 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | |||||| |||||| |||||||||||||| || || || ||||| Sbjct 543031 AGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCA 542972 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| |||||||||| || ||||| |||| || || | | || ||||| || Sbjct 542971 ACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAA 542912 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || | |||||||| ||| || Sbjct 542911 TATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGA 542875 >seq4 Length=775478 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || | || || || || || || | ||||| ||| | | Sbjct 280722 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTTGAACCATCG 280781 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| ||||| |||||| ||||| || |||||||| || || |||||| Sbjct 280782 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 280841 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||| |||||||| ||||| || | |||||| |||| | || ||||| || Sbjct 280842 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 280901 Query 24884 ATTCAAAAGGAATCGAC 24900 ||||||||||| || || Sbjct 280902 ATTCAAAAGGAGTCCAC 280918 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || | ||||| ||| | | Sbjct 281177 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281236 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||| |||| ||| ||||| || || ||||| || || ||||| Sbjct 281237 GACACAATTGAGAACGTTAAGGCAAA-GATTCAAGATAAGGAGGGAATTCCACCTGATCA 281295 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| ||||| || ||||| || | || ||| |||| | || ||||| || Sbjct 281296 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281355 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 || ||||| || || || |||| ||||| ||| || Sbjct 281356 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGA 281392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897380674920