Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 >seq1 Length=677778 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || | || || || |||||||| || ||||| | | || | | || || Sbjct 542882 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCC 542941 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | |||| | || ||||| || || ||||| ||||||||||| Sbjct 542942 AATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTG- 543000 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| ||| ||| | || | |||||| ||| |||| ||||| | || || || || Sbjct 543001 AATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTT 543060 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| ||||| ||||| |||||||| || Sbjct 543061 CCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 543093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219016900499