Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq13 111 2e-19 >seq13 Length=714223 Score = 111 bits (122), Expect = 2e-19 Identities = 245/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Minus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAAC 163058 ||||||||| |||||| ||| |||||||| ||||| | | ||| | ||||| ||| Sbjct 710186 TTAAGGTTGTACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCACGGAGAAT 710127 Query 163059 AAAATTTATGTGAAA---CTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || | ||| ||||| | || | || ||| | |||||||| | |||||| Sbjct 710126 C---TTCACTACAAAGTACTATAGTAAATATGGCTCAAAACTTTGTTGGAAGCAATAATC 710070 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 || ||| | ||||| |||||||||||||| ||| ||||| || || ||| | Sbjct 710069 TAAATTTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAGGAAGGTGGAAAGGATGCAA 710010 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAG 163232 ||| || || | ||||| | ||| |||| | |||| | |||||||||| || Sbjct 710009 GTGCTGC-TC--GTTATATATTTACTAAACTATCTAAATGGACTAGATATATATTTCCAG 709953 Query 163233 AAGAAGATGACCCTATTTTAAATTA--TA-CTGTTGAGGG---------TGAACCTGTTC 163280 ||| ||||| ||| | |||| ||| || || ||| || ||| ||| | Sbjct 709952 AAGCTGATGATCCTTTATTAACTTACTTATATGATGATGGACAACAGATTGAGCCTTTGT 709893 Query 163281 ATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 163340 ||| | | ||| | |||||| | ||| || |||||||| || |||||| |||||||||| Sbjct 709892 ATTATGTTCCAATCATTCCAATGATTCTAGTTAATGGTACTGATGGTATAGGAACAGGAT 709833 Query 163341 GG 163342 || Sbjct 709832 GG 709831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177290350920