Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 219 8e-52 seq1 214 4e-50 seq12 84.2 4e-11 >seq4 Length=775478 Score = 219 bits (242), Expect = 8e-52 Identities = 181/221 (82%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| ||| || || || || ||||| |||||||| ||| |||| || || ||| Sbjct 280930 ACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCT 280871 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || || |||||||||| | |||||||| || || |||||||||||||||||| Sbjct 280870 AATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGA 280811 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||||||||| || || ||||| ||||||||||| || ||||| Sbjct 280810 ATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTT 280751 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 |||||||| ||||| ||||| |||||||| ||| ||||||| Sbjct 280750 CCTGTCAAAGTCTTAACAAAAATCTGCATAATTGTATTTTT 280710 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || || || || | ||| || ||||| || ||||| |||||||| Sbjct 281403 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281344 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||||| ||| || || || ||||||| | ||||||||| || || Sbjct 281343 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281284 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||||||||||||||| || || || ||||| || || ||||| ||| Sbjct 281283 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACT 281224 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| |||||||| || || ||||| |||||||| Sbjct 281223 TCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 Score = 100 bits (110), Expect = 6e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 82711 CCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAG 82770 ||||||||||||||||||| |||||||||||||| || || ||||| || || |||| Sbjct 281049 CCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAG 280990 Query 82771 TTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || ||||| || || ||||| |||||||| Sbjct 280989 TGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 280950 >seq1 Length=677778 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || || ||||||| |||||| || || || ||||| |||||||| Sbjct 542863 ACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGA 542922 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | ||||||||||| | |||||||||||||||||| || | |||||||| || || Sbjct 542923 TAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGG 542982 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||||||||||||||||||||| ||||| || || |||||| || Sbjct 542983 GATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 543042 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| || || || || |||||||| |||||||| Sbjct 543043 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 >seq12 Length=335020 Score = 84.2 bits (92), Expect = 4e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 144101 TATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCT 144160 ||| | |||||| |||||| | || || ||| | || |||| || || ||||| | | Sbjct 40431 TATTGCAAGAGCTTGGGATTTCAACAAGCCTATCATAGTTTGTCCTGCAATGAACAATTT 40490 Query 144161 TATGTGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCAT 144220 ||||||||||||||| ||||| || ||| ||||| ||| ||||| | | |||| | Sbjct 40491 TATGTGGGAACATCCGATTACTTTAAGACAAATAGACACTCTAAAATCTTTTGGTTATAA 40550 Query 144221 AGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGG 144271 || |||| ||||| || ||| | || ||||| || ||| | ||||| Sbjct 40551 AGTAATATTTCCAATAGAGAAGAAATTGGCATGTGGCGA-GTATGGAATGG 40600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826709393221