Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq1 104 2e-17 >seq4 Length=775478 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||||| || ||||| | ||||| | ||||| ||| ||| | Sbjct 281177 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAA-CCATC 281235 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || || ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 281236 GGACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 281295 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || ||| | ||||||| |||| | | |||||||| Sbjct 281296 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281355 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| |||||||| ||||| | ||||| || || ||| | ||||| |||| Sbjct 281356 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 281405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 25150 TATAAGTAGTTTTCAATTAA-ACAAC-ATGCAAGTGTTTGTAAAAACATTAACCGGAAAA 25207 |||| | | | ||||| || |||| ||||| | ||||| || || || || ||||| Sbjct 280695 TATAGGGATTGTTCAAAAAATACAATTATGCAGATTTTTGTTAAGACTTTGACAGGAAAG 280754 Query 25208 TCGATCACGATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTAC 25266 | ||||| | ||||| ||| ||| || | || || || | ||||| ||| ||| Sbjct 280755 ACAATCACTTTGGAAGTTGAA-CCATCGGACACAATTGAAAATGTAAAGGCAAAGATTCA 280813 Query 25267 CGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGA 25326 ||||| || || || || || ||||| || | | || | | || || ||| | || Sbjct 280814 AGATAAGGAAGGAATTCCACCTGATCAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGA 280873 Query 25327 AGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| |||| | || ||||||||||||||||| || ||||| | |||||||| || Sbjct 280874 GGATGGAAGAACTCTCTCTGATTACAATATTCAAAAGGAGTCCACTTTGCATTTAGTCTT 280933 Query 25387 AAGATTGAGAGGAGG 25401 |||| | ||||| || Sbjct 280934 AAGACTCAGAGGTGG 280948 >seq1 Length=677778 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||||||||| ||||| || || | ||||| | ||||| ||| | Sbjct 543093 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 543034 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || ||||| ||| | |||||| ||| ||| || ||||| ||||| || || ||| Sbjct 543033 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 542974 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || | || || | | || |||||| | ||||| | ||| | | | |||||| Sbjct 542973 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 542914 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || || | || || || || ||| | ||||| || Sbjct 542913 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 542864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094183016480