Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq1 89.7 5e-13 >seq4 Length=775478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 || || || ||||| || || |||||||||||| |||||||| | | |||| | Sbjct 280936 CTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCA 280877 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | ||||| || ||||| || || ||||| || || | |||| | ||||| Sbjct 280876 TCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTA 280817 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || |||||| ||| | | || | | ||||| | ||| || |||| ||||| Sbjct 280816 TCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATT 280757 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || |||||||| || ||||| |||||||| Sbjct 280756 GTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 280722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 35501 TCTTTAT-TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTT 35559 |||||| ||||||| | | ||||| ||||||||||| || ||| ||||| || || Sbjct 281413 TCTTTACATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATT 281354 Query 35560 GTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTG 35619 |||||| | | |||| | || || | ||||| || || || || || || || || Sbjct 281353 GTAATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTG 281294 Query 35620 GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCT 35679 || | |||| | |||||| || |||||| ||| | | | | ||||| Sbjct 281293 ATCAGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGA 281234 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||| || || | ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 281233 TGGTTCAACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 >seq1 Length=677778 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| ||||| || || ||| |||||||||||| |||||||| | Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542923 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | |||| |||| || || || ||||| |||| ||||| || || | || Sbjct 542924 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542983 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| || | | | | | ||||| | ||| || Sbjct 542984 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 543043 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || |||||||| ||||| |||||||| Sbjct 543044 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793380238120