Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq30 104 2e-17 >seq30 Length=890313 Score = 104 bits (114), Expect = 2e-17 Identities = 368/555 (66%), Gaps = 20/555 (4%) Strand=Plus/Minus Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 ||||| ||||||||| | || || |||||| | ||||| |||| || | | |||| Sbjct 147655 ATGTATAAAAAAGCAGAAGCATCGTTTTGGGTTACTGAAGAGATTGACTTAAGTCAAGAT 147596 Query 43799 T-TAGCACATTGG-ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGG 43856 ||| | ||||| | | ||||| | | || | ||||||||| | || | | Sbjct 147595 ACTAG-AGATTGGGAAAGTCTTAAAGACCCT-GAGAGACATTTTATTAAATACGTCCTAG 147538 Query 43857 CGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA-A 43915 | || |||||||| || || || || || | ||||| |||| | ||| ||| | | | Sbjct 147537 CTTTCTTTGCTGCTAGTGATGGTATTGTTATGGAAAACTTGGCT-GTCAATTTCCTAAGA 147479 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||| | || | ||||||||| || | ||||| |||||||| || || || | ||| Sbjct 147478 GAAATACATATCCCAGAAGCAAGAATGTATTATGCATTTCAAATGGCTATTGAGCAAATT 147419 Query 43976 CATTCGGAAATGTA--CAGTCTTC--TGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| |||| || | | || ||| ||||| | | ||| | | ||| || Sbjct 147418 CATAATGAAACATATTCCTTGTTAATTGACAGATATATTACTGAAATAAAAGAACGTCAA 147359 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 || | || ||| | || || | |||| ||||| | |||||||| ||||| Sbjct 147358 --AT-GCTT-TTTGAGGCTATTTCTCATATTTCTGCAGTTAAAAAGAAAGCAGAATGGGC 147303 Query 44092 CCTTAAATGGATAAAT--TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 ||||||||| ||| | ||| ||| |||||| || || || | | || | | Sbjct 147302 AACTAAATGGATGAATAATGAAA-GAT-CTTTTGCTGAGAGAATTATTGGATTCTGTGCT 147245 Query 44150 GTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 || ||||| ||| | ||||| || | | |||| | | ||||||||| | || || || || Sbjct 147244 GTAGAAGGAATTCTTTTTTCTGGTAGCTTTTGTG-CTATATTTTGGCTTAAAAAGCGTGG 147186 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 | |||||||| | || || || ||||| | || || ||||||||||| |||||| Sbjct 147185 ACTTATGCCTGGACTTACATTCTCTAATGAACTTATTAGCCGTGATGAAGGATTACATGC 147126 Query 44269 CGATTTTGCTTGCTT 44283 || ||||||||||| Sbjct 147125 TGACTTTGCTTGCTT 147111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455811084195