Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq4 93.3 4e-14 >seq1 Length=677778 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||||||||| || || ||||| || |||||||||||||| || | | | |||| Sbjct 542878 CAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTC 542937 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || | || |||||||||||||| || || | ||| ||||| || Sbjct 542938 TTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC 542997 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| ||| | | || | |||||||| | ||||||||| | || || | Sbjct 542998 TTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGT 543057 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || | |||||| ||||| || ||||| Sbjct 543058 CTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 543090 >seq4 Length=775478 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||||||||||||||| || || |||||||| |||||||| || | | | | || Sbjct 281389 CAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATC 281330 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | || || || ||| | || | ||| |||||||| || || | ||||| ||||| Sbjct 281329 TTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATC 281270 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| || | | | || | ||||| | | ||||||||||| ||| || | Sbjct 281269 TTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGT 281210 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||| ||||| ||||| || |||||| Sbjct 281209 CTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934198023368