Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 >seq4 Length=775478 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || || ||||| || ||| | || ||||| || Sbjct 281177 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281236 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || ||||| || |||||||||||||| || || || Sbjct 281237 GACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281296 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| || || || |||||| | || |||| | || || | || || ||| Sbjct 281297 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281356 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||| || |||||| | ||| | || ||| | ||| | |||||| Sbjct 281357 ATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGA 281404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310121973680