Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 181 9e-41 seq4 154 1e-32 >seq1 Length=677778 Score = 181 bits (200), Expect = 9e-41 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||| | || || ||| | || || | ||||| ||||| || Sbjct 543090 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 543031 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 543030 GACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 542971 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||||||||||||| || ||| | || |||||||| Sbjct 542970 CAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAAT 542911 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || || || ||||| ||| Sbjct 542910 ATTCAAAAGGAGTCTACTTTGCACTTGGTATTG 542878 >seq4 Length=775478 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || ||| | || ||| | ||||| ||||| || Sbjct 281177 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281236 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||| |||||||| || || || || ||||| |||||| Sbjct 281237 GACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||| || || ||||| ||||| | || |||| |||||||| Sbjct 281297 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281356 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||| ||||| || ||||||||||| ||| Sbjct 281357 ATCCAAAAAGAGTCCACTTTACATTTGGTATTG 281389 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | || ||| | ||||| ||||| || Sbjct 280722 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTTGAACCATCG 280781 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| |||||||| || ||||| || ||||| |||||| Sbjct 280782 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 280841 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | || || || ||||| || || | || | || |||||||| Sbjct 280842 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 280901 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||||||||| || || ||||| || || Sbjct 280902 ATTCAAAAGGAGTCCACTTTGCATTTAGTCTT 280933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918187977280