Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq30 280 2e-70 >seq30 Length=890313 Score = 280 bits (310), Expect = 2e-70 Identities = 980/1518 (65%), Gaps = 19/1518 (1%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| || | |||||| ||||| | ||| || ||| || ||||| || Sbjct 426223 ATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAGT 426164 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 | ||||||| | | ||| ||||| || || ||||| | || || ||||| ||||| || Sbjct 426163 AAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGG 426104 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | | | ||| | ||| |||| | || | ||||| || | | ||| Sbjct 426103 AGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCA 426044 Query 75886 ATCCCAAAGATCTGAT---GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 || ||||| | || || ||| |||| | || |||||||||| || || || Sbjct 426043 GTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTACT 425984 Query 75943 AGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGC 76002 || ||| ||| ||| ||||| || | ||| || ||||| || || |||||||| || Sbjct 425983 CGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGC 425924 Query 76003 CTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAA 76061 ||| | ||| | |||||||| ||| ||||||| |||||| || || | |||| Sbjct 425923 CTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTC 425864 Query 76062 GACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATAC 76121 | ||| | || | | | | ||||| |||||| ||||| ||||| ||||| | Sbjct 425863 TGAT-TCATATGGCATACGAAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTC 425805 Query 76122 CAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATAT 76181 ||| || | |||| | ||| || ||| | |||||| | || ||||| || Sbjct 425804 CAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGAT 425745 Query 76182 CTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT 76241 | | |||||| || | ||| || || ||| | || ||||||| || ||| | Sbjct 425744 CAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGT 425685 Query 76242 CAAATTTTCC---ATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAA 76295 | ||| || |||| | |||||| | |||| | || || || || ||||||| Sbjct 425684 CGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAA 425625 Query 76296 CGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 | || | ||||| || | | || | ||| || || ||||||| |||||| | | Sbjct 425624 CAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAA 425565 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAA-AGAACAAAC 76414 |||| || | ||||| ||||| ||||| | || | |||||| || ||| ||| Sbjct 425564 TAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAA- 425506 Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTAT 76473 || ||||| |||||||| || | || | || | ||| | | ||| || || || Sbjct 425505 GGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT 425447 Query 76474 TATAGATTTGTATCGCTTCTCTC--TTTCATATTGTGTATATAACCGTTCAAATTCATCT 76531 | ||| | ||| | || |||| || | | ||||| | ||| ||||| Sbjct 425446 AGTT--TTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGTTTCTTAAACTCATCA 425389 Query 76532 CCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCT 76591 ||||||||||| | ||| || ||||||| ||||||||| | | ||| || ||| Sbjct 425388 CCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCT 425329 Query 76592 TCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 76651 | || ||||| | |||||| |||||||| | ||| || ||| ||| || || ||| | Sbjct 425328 TTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCAT 425269 Query 76652 CTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGC 76711 || || || ||||| ||||||| | | || | ||||||| || ||| |||| Sbjct 425268 CTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGC 425209 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 || || || | ||| || || || ||||| ||||| || || || || |||||| Sbjct 425208 CACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATAT 425149 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTT 76831 || ||||| | ||||||||| | ||||||||||| | || ||||| | ||||| || Sbjct 425148 CTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTA 425089 Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 || |||||| || | | | ||||||||| | | | || | || || || Sbjct 425088 CCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCA 425029 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 | ||| || ||||| | | | |||||| | || || |||||| ||| || Sbjct 425028 GTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCT 424969 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAAT 77011 || | || | |||||| ||||||||| | ||| || | || || | Sbjct 424968 GGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGC 424909 Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 ||||| | ||||| || || | |||| || | || || |||||||| | | || Sbjct 424908 GTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCC 424849 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || ||||| | ||| || || || || | ||| | | ||| || |||| ||| Sbjct 424848 TCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCT 424789 Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 77191 ||| |||| |||| ||| | | | || || |||| |||||||| || ||||||| Sbjct 424788 ACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAA 424729 Query 77192 TTGTATGAAAAGTCTCTT 77209 | ||| ||| ||| || Sbjct 424728 TCATATTCAAAATCTTTT 424711 Score = 226 bits (250), Expect = 4e-54 Identities = 574/864 (66%), Gaps = 12/864 (1%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||| ||||| || || | || || || ||||| ||||| |||| Sbjct 146810 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 146869 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATC 46444 | ||| ||| ||||| |||| || ||||||| |||||| |||||||| | ||| Sbjct 146870 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 146929 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAAT 46504 | | | ||| |||||||| || || ||||| ||||| ||| | | | | | Sbjct 146930 CAGAG-CAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGT 146988 Query 46505 TCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAG 46564 ||||||| || || | || || || | || |||||| | | ||| | | |||| Sbjct 146989 TCATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAG 147048 Query 46565 CATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGG---ATGCATCAAATGTTTAA 46621 | || || || || | |||| | | ||||| | || | | | ||| Sbjct 147049 CTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGT 147105 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 | ||||| || ||||| ||| ||| | |||||||| | ||||| | ||| ||||| | Sbjct 147106 ATATTAAGCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGA 147165 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCA 46740 |||| || |||||||| |||||||||||||| ||||||||||||| | | |||| | ||| Sbjct 147166 ATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCA 147224 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| | || ||||||||||| |||| | | || |||||| | || ||| Sbjct 147225 GAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCA 147284 Query 46801 TTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 |||| ||||| | ||||| || || || || || || || || ||| Sbjct 147285 TTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATA 147344 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 || | ||| || | | ||| | | || ||| |||| | || ||||| | | Sbjct 147345 GCCTCAAAAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAA 147404 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 || |||| |||||| | ||||||||||| |||||| | ||| | ||||||||| Sbjct 147405 TATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCT 147464 Query 46981 GTAATCTGTACCTCT-GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACT 47039 | || |||| ||| || |||| | ||| ||| || || | || || |||||||| Sbjct 147465 GGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACT 147523 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT 47099 ||||||||| || || | || | ||||||||||| | | ||| | | || | | Sbjct 147524 AGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTC 147583 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || | |||||| || || | ||||||| ||| || || || ||||| Sbjct 147584 CCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGC 147643 Query 47160 TTTTTTATACATATTCCATATATC 47183 ||||||||||||| ||| ||||| Sbjct 147644 TTTTTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934052444480