Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4 181 2e-40 seq1 149 1e-30 seq13 122 2e-22 >seq4 Length=775478 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| |||||| ||| ||||||||||| ||||| |||| ||| || | ||||| || Sbjct 281386 TACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCTTC 281327 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || ||| ||||| || ||||| ||||||||||| ||| ||||| |||||||| ||||| Sbjct 281326 TAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTG 281267 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||||| || ||| | || || |||||||| | ||| ||||| | |||||| ||||| Sbjct 281266 AATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGTCTT 281207 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || |||||||| Sbjct 281206 TCCTGTCAATGTTTTGACAAAAATCTGCAT 281177 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 ||| || ||| || ||||| || ||||| |||| || || | |||||||||| ||| Sbjct 280925 ATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCTAATTG 280866 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| |||||||| ||||| ||||| ||| ||||| || ||||| ||||| ||||| Sbjct 280865 CTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTT 280806 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| | || || |||||||| | ||| ||||| | |||||| ||||| || || Sbjct 280805 TGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTTCCTGT 280746 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| || |||||||| Sbjct 280745 CAAAGTCTTAACAAAAATCTGCAT 280722 >seq1 Length=677778 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || ||||| |||| || || | || || || | |||||| || |||||| Sbjct 542900 TCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAG 542959 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| ||||| ||| || ||||| || |||||||| |||||||||||||| | Sbjct 542960 ATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTC 543019 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| |||| ||| ||||| | ||||| ||||| || || ||||| || || Sbjct 543020 TCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACA 543079 Query 283089 AATATCTGCATTTTC 283103 || |||||||| ||| Sbjct 543080 AAAATCTGCATCTTC 543094 >seq13 Length=714223 Score = 122 bits (134), Expect = 2e-22 Identities = 314/475 (66%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 273507 ATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATC 273566 || || ||||||||| ||||||||| || |||| | ||||| ||||| || | | Sbjct 709715 ATTTTCCCTTTGAAAGATTTGTACCAGGGAGTCATTGGAACCATTATCTCACCTTTTAAC 709774 Query 273567 AGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAA 273626 | || | || || |||||||||||| || ||||| | ||||| || ||| Sbjct 709775 ATTCTTTTCAAGTTCATAATAATATCTTTTGGATTGTAGTTAGGAACTGAACTACTCCAT 709834 Query 273627 CCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATAT 273686 || || || ||||| || |||||| || ||||| | || || ||||| |||||||| Sbjct 709835 CCTGTTCCTATACCATCAGTACCATTAACTAGAATCATTGGAATGATTGGAACATAATAC 709894 Query 273687 TCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCA 273746 |||||||| | | ||||| || || | ||| | || |||| |||||| | || Sbjct 709895 AAAGGCTCAATCTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 709954 Query 273747 ACGAAAACCTTTCGCGTC--TGAGGATTCAGTTTCGTGAAAATGTACC---TGGCACTCG 273801 || | | || ||| | ||| ||||| || || || || | ||||| | Sbjct 709955 GGAAATATATATCTAGTCCATTTAGAT--AGTTTAGTAAATATATAACGAGCAGCACTTG 710012 Query 273802 CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTA 273861 || ||||| ||||||| | || |||||| ||||| || || | |||| Sbjct 710013 CA---TCCTTTCCACCTTCCTTTCTACTACCAAATTGACCACATGGTTCTAATAAATTTA 710069 Query 273862 TGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCT 273921 || ||||| || || | | ||||||||||| || ||||| | || || || | Sbjct 710070 GATTATTGCTTCCAACAAAGTTTTGAGCCATATTTACTATAGTACTTTGTAGTGAAGATT 710129 Query 273922 CGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 | ||||| ||||| || || ||||| || | ||||||| || || ||||||| Sbjct 710130 CTCCGTGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTACAACCTT 710184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738676957506