Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq690 107 2e-18 seq1666 105 6e-18 >seq690 Length=59813 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 20058 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-AAAGTGTCCTGC-CATCCT 20115 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 20116 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 20175 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | || ||||||| Sbjct 20176 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTT 20235 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || |||||||| || ||||| |||||||| ||| Sbjct 20236 TCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 20270 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 19830 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-AAAGTGTCCTGC-CATCCT 19887 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 19888 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 19947 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | ||| || || | Sbjct 19948 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCT 20007 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| |||||||| |||||||| Sbjct 20008 TGCCAGTCAGAGTCTTCACAAATATCTGCAT 20038 >seq1666 Length=111304 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||||| ||||| || ||||||||||| | | | | | ||||| Sbjct 109462 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 109521 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || |||| | |||||||||||| ||| | | ||||||||| Sbjct 109522 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 109581 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 |||||| ||| | | | |||||||| | || |||| || | || |||||||| Sbjct 109582 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 109641 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || ||||| |||||||| || || ||||| ||||| Sbjct 109642 CCCGTGAGGGTTTTCACGAAGATTTGCATTTTGTCT 109677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239407204297