Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq690 111 1e-19 seq1666 102 7e-17 >seq690 Length=59813 Score = 111 bits (122), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGG 94850 |||| ||||| || | || || ||||| || | ||| ||||| | ||||| || Sbjct 19824 CGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG--AAAGTGTCCTGC 19881 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||||||| || ||| |||| || | | |||||||| |||||||| ||||| | Sbjct 19882 CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCT 19941 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || |||||||| || ||| || || | | || ||||| | |||| Sbjct 19942 TATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGA 20001 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| ||||| |||||||| |||||||||| Sbjct 20002 TTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATGC 20040 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| |||| ||||| || | || || ||||| || | ||| ||||| Sbjct 20040 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-- 20097 Query 94841 ATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || |||||||||||| || ||| |||| || | | |||||||| |||| Sbjct 20098 AAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 20157 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| || || | || |||||||| || ||| || || | | || | Sbjct 20158 GAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAA 20217 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || |||||||| || || ||||| || |||||||||||||| Sbjct 20218 CATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 >seq1666 Length=111304 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| |||||| || | ||| ||||| | || | |||||| Sbjct 109462 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 109521 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||||||||| | || || | | |||||||| || ||||| ||||| ||||| | Sbjct 109522 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 109581 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| || ||| || || | | || ||||| | |||||||||||| Sbjct 109582 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 109641 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| ||||| ||||| Sbjct 109642 CCCGTGAGGGTTTTCACGAAGATTTGCAT 109670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278328438920