Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1590 136 3e-27 seq690 118 7e-22 seq1666 95.1 8e-15 seq1025 84.2 1e-11 >seq1590 Length=4531 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1030 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1089 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 1090 TAATCCATTCATGCACGTCACTAATTAGATGACGA 1124 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 3110 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 3169 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 3170 GCCAATATTTAGCTTTAT 3187 >seq690 Length=59813 Score = 118 bits (130), Expect = 7e-22 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 38069 ACAAATACAAATCCAATCATTACCA-CCTCTCAAACGCAACACCAAATGAAGAGTGCTCT 38127 ||| |||||| |||| ||||| || |||| | ||||| ||||||||||| || || Sbjct 19791 ACATATACAA-TCCA-TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACT 19848 Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||| ||||| ||||||||||| | | | || || | || || |||||||| | Sbjct 19849 CCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAA 19908 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | || || || ||||| | || | |||||| || ||| || ||| ||||||||| | Sbjct 19909 TGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTT 19968 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || |||||| ||||| || ||||| || || || || |||| || ||||| | Sbjct 19969 CGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAA 20028 Query 38308 ATATCTGCATG 38318 ||||||||||| Sbjct 20029 ATATCTGCATG 20039 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||||| ||||||||||| || |||||| ||||| ||||||||||| Sbjct 20040 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 20099 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || |||||||| || || || || ||||| | || Sbjct 20100 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 20159 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || ||| ||||||||| | || |||||| ||||| Sbjct 20160 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 20219 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | || || || || |||||||| Sbjct 20220 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 >seq1666 Length=111304 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||||| ||||| || || |||||||| || | | | || || Sbjct 109462 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 109521 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| || || || || || || ||||| | || | |||||| ||||| Sbjct 109522 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 109581 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || ||||| | || || || | || || ||||| Sbjct 109582 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 109641 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| || ||||| || Sbjct 109642 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 109673 >seq1025 Length=46751 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | | |||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 459 CTCTCTTTCCCAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 518 Query 20007 GGTAATATTTAGCCTT 20022 | |||| | ||| || Sbjct 519 GCCAATAGTAAGCTTT 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937823257807