Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1666 123 6e-23 seq1111 102 2e-16 seq690 93.3 1e-13 >seq1666 Length=111304 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 288263 GTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTT 288322 |||| | |||| |||||||| || ||||| || || || | ||| || | || || | Sbjct 109460 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 109519 Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 | | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | Sbjct 109520 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 109579 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 |||||||||| || || ||||| || | ||| | || || || |||||||| || | Sbjct 109580 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 109639 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||| || || || || ||||| || |||||| ||| Sbjct 109640 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTTGT 109675 >seq1111 Length=40824 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAG 269229 |||||| ||||| ||||||||||| || ||||| || |||| || || | ||| Sbjct 8928 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 8987 Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289 || | | ||| | | ||||||||| | ||||||||| || || || ||| |||| || Sbjct 8988 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 9047 Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG----AATCC 269345 || ||||||||||| ||||| ||| | ||||| ||| | || || ||| || | Sbjct 9048 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGTGATGGTACAAAAC 9107 Query 269346 A--GAAGA-CAATATTTTTGCCATCGATGATGATTTTTAA 269382 | ||||| ||| | |||| | |||||| |||||| ||| Sbjct 9108 AAGGAAGAGCAACAGTTTT-CTCTCGATGCTGATTTCTAA 9146 >seq690 Length=59813 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| ||||||||||| Sbjct 19893 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 19952 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || | ||||| ||||| || Sbjct 19953 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 20012 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||||||||| Sbjct 20013 GTCAGAGTCTTCACAAATATCTGCAT 20038 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| ||||||||||| Sbjct 20121 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 20180 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || || || || || ||||| Sbjct 20181 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCT 20240 Query 288448 GTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||||||||| || ||||||||| || Sbjct 20241 GTGAGAGTCTTGACAAAGATCTGCATTGTG 20270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179619682402366