Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_011222.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq1521 120 9e-23 >seq1521 Length=1535 Score = 120 bits (132), Expect = 9e-23 Identities = 271/402 (67%), Gaps = 13/402 (3%) Strand=Plus/Plus Query 20150 TAATTGTTAGTGCTTGGAATGTTGGAGAAATACACATGATGGCACTTCCTCCGTGCCACT 20209 |||| || ||||| ||||||||| || ||| | |||||| | || ||||| | Sbjct 179 TAATGGTGAGTGCATGGAATGTTACCGATTTACCAAAAATGGCATTAATGCCCTGCCA-T 237 Query 20210 GCTTT-TTTCAGTTCTATGTGTCTGAGTCCGGTTATTTGGACTTGAAACTGTACCAAAGA 20268 || || |||||||| |||||| | | || | || || | || || ||| | Sbjct 238 GCATTGTTTCAGTTTTATGTGGCCAAT---GGACAATTAAGCTGCCAGCTATATCAACGC 294 Query 20269 AGCGCAGACCTATTTTTAGGCGTTCCTTTCAATATTGCATCTTATTCTATCTTGCTGTCT 20328 || || || |||||||||||||||| ||||||||||| |||||| || | || | Sbjct 295 AGTGCTGATGTATTTTTAGGCGTTCCGTTCAATATTGCCTCTTATGCTTTGTTAACCTTA 354 Query 20329 ATGGCTGCACAGGTTTGCGGTTTAAAGCCTCGTAGATTCATTCATACGATCGGTGACGGA 20388 ||| ||| |||||||| | |||| | || || ||| |||||||| | ||||| | Sbjct 355 ATGATTGCGCAGGTTTGTGATTTACAACCCGGTGAATTTATTCATACTTTTGGTGATGTG 414 Query 20389 CATATATATTTGAATCACGTTGAGCAGGTGAAAGAACAATTGAGTAGAGAGCCGTTTGCC 20448 ||| |||| || || |||| |||| || ||||||||| || | |||||| | Sbjct 415 CATTTATACAATAACCATATTGAACAGGCCCAATTACAATTGAGCAGGAATCCGTTTCCG 474 Query 20449 CTTCCAAAATTGGAGC----TAAACCCAAATGTTCGTAATATATTCGATTTTAAGTATGA 20504 | |||||| || | | |||| ||| | | | |||| || |||||| | | | Sbjct 475 TTACCAAAAATGTACCTGAATAAAACCATA-GACC---ATATTTTTGATTTTGATTTCAA 530 Query 20505 AGATATTAAAATAGTAGATTATAACTGCCATCCGGCTATAAA 20546 ||| || | | | | ||||| | |||||||||||||| || Sbjct 531 TGATTTTGTATTGGAAAATTATCAATGCCATCCGGCTATTAA 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143647281644174