Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq690 113 4e-20 >seq690 Length=59813 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||||| ||| ||||| | | |||||||||| ||||||||||| || Sbjct 19812 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 19871 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| || || || |||| | | || |||||||| || || ||||| Sbjct 19872 AGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 19930 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| ||| || | | ||| | ||| || | | ||| || Sbjct 19931 AATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 19990 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||||||||| || ||||| ||||||||| Sbjct 19991 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 20039 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | |||||||| ||| ||||| | | |||||||||| ||||||||||| || Sbjct 20039 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 20098 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | || | ||||| || || || |||| | | || |||||||| || || |||| Sbjct 20099 AAGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 20157 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| || || ||| ||| || | | ||| | ||| || | | ||| | Sbjct 20158 GAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAA 20217 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 20218 CATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248151065840