Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1870 331 1e-85 >seq1870 Length=140263 Score = 331 bits (366), Expect = 1e-85 Identities = 1001/1531 (65%), Gaps = 34/1531 (2%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 |||||||| ||||||||||| |||| | |||||| || | | ||| || ||| | Sbjct 91324 CCCTTATCGTTCGTAATCGTGATCTGGTTGGATTTCCCAGTGTTCTTTTCGGTGGCAGTG 91265 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| || ||||||||||||| |||||| | || | ||||| || || || | Sbjct 91264 ACGTTCATGATGCCATTTGCATCAATATCGAAGGTGACTTCGATTTGAGGG--ACGCCAC 91207 Query 6755 GGTGCGGCTGGA---ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 || | ||| ||| || || || | || | || | | |||||||| | | | Sbjct 91206 GGGG-GGCAGGAGGGATTCCATCCAAGTGGAACTTGCCCAAGAGGTTGTTATCCTTGGTC 91148 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTT 6871 | |||||| |||||| |||||| ||| ||| | || || || ||| || Sbjct 91147 ATGGCACGTTCTCCTTCAAAGACTTGAATCAACACTCCTGGCTGGTTGTCTGCGTAGGTG 91088 Query 6872 GAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATA 6931 | ||||| || ||||| | || || || || || | | || | | ||||| Sbjct 91087 GTGAAGACCTGGGACTTCTTGGTGGGGATGGTGGTGTTGCGCTCGATCAACTTCGTCATG 91028 Query 6932 ATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCT 6991 | || || ||| || | ||||| || || || | ||||| | || | || || Sbjct 91027 ACGCCTCCAGCAGTCTCCAACCCAAGCGAGAGTGGCGCTACGTCTAGCAGCAGAAGATCC 90968 Query 6992 TGAAC---AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || ||| | ||| | |||| | | |||||||| || || | || |||||| Sbjct 90967 TGTACCTGAGAGTTGTTGAC---ACCCTTGAGAATGGCGGCCTGCACTGCAGCACCGTAT 90911 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC--G 7106 || || |||||||| ||||| || | | || || | || || | ||| | Sbjct 90910 GCCACGGCCTCATCCGGGTTGATGGAACGGCAGGGCTCCTTGTCATTGAAGAACTCCTGG 90851 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 |||| | || ||||| || || || || || || || |||||||| || | || | || Sbjct 90850 ATAA--TCTGCTGAATCTTGGGAATACGGGTAGACCCTCCGACCAAGACAACCTCGTGCA 90793 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | | || ||||| | ||| | || || || || | | | | | | Sbjct 90792 CACTGCGCTTGTCGATGGCAGCGTCCTTCAACACCTTCTCCACTGGCACAAGAGAACTCC 90733 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 ||| | ||||| || || ||||| |||||||| |||| || ||| | |||||| Sbjct 90732 TGAAGTAATCCATGCAGAGCTCCTCGAAACGTGCCCGGGAAAGAGATACGGAATAATCAA 90673 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCG-TCGAAGATAACGTTC 7343 ||| || | | |||||| || || ||||| | || ||| | |||| | || | Sbjct 90672 TGCCTTCAAACAGCGAATCGATCTCGATGGTGGCCTGGGTGCTGCTCGAG---AGGGTGC 90616 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 |||| || | |||||| || || | || | || ||||| ||| ||| || || Sbjct 90615 GCTTCGCTCTCTCACATTGAGTGCGCAGGCGTCTTAGAGCACGGCTGTTGCCGCTAAGAT 90556 Query 7404 CTTT-CTT--ATGTTTACGTTTAAACTCTT-CAG--AGAAGTGTCGAAGGAGTCTCGAAT 7457 | || ||| || || || || || || | || |||||| | |||||| | Sbjct 90555 CCTTGCTTCGATTCTTCCGCTTGAAATCCTGCATGCAGAAGTCC---ACGAGTCTGTTGT 90499 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || |||||||| || ||||| || || || || ||||| |||||||| || Sbjct 90498 CGAAGTCCTCTCCACCCAAATGGGTATCACCAGCTGTAGCCTTGACCTCAAAGATGCCGT 90439 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || ||| | | || ||||||||||| || |||||||||| ||| || ||||| || | Sbjct 90438 CCTCGATGGTAAGCAGGGAAACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACAT 90379 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | || | | | ||||| || ||||| || || || || || ||||| || || | Sbjct 90378 TCATTTCACCCTGTCCCTTCTTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGT 90319 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 |||| ||||||||| |||||| || |||||||| | || || || || || || || | Sbjct 90318 TAATGATACGAAGAACGTTCAGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCT 90259 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | |||||||| ||||| ||||| || || | || || ||| | |||| || || | Sbjct 90258 GAGAATCGTTGAAGTATGCCGGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAACGA 90199 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 |||| || || || || ||||| || || ||||| | ||||| || || | || Sbjct 90198 ACGACTCGGCAATTTCCTTCATCTTCACCAGCACCATGGCGGAAATTTCCTCCGGATGAA 90139 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 | ||||| |||| | | | |||||||| | || ||| || | || | Sbjct 90138 AAGTCTTCGTAGCACCTTGGTAGTTCACTTCAATAAGTGGCTTACCCCCGCTTCCAGCCT 90079 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | ||| | ||| ||| | ||||| || || ||| |||| ||||| | || Sbjct 90078 TGACCGTGAACGGCCAGTGCTTCATGTCCGACTGCACCGCGGGGTCATCGAACTTCCGTC 90019 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 | || |||||||| || |||||||| ||||||| ||||||| | || ||||| |||| Sbjct 90018 CAATGAGACGCTTCGCGTCAAAAACGGTGTTTTCGGGGTTCCTCGCCACCTGGTTTTTCG 89959 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | ||||| || | || || || | || || || ||||| || || ||||| |||| Sbjct 89958 CGGCGTCGCCCACCAGTCGCTC---TGTGTCGGTGAATGCGACATAGGAAGGGGTGGTTC 89902 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 || || ||||||||||| || || || |||| ||||| | ||| || || ||||| | Sbjct 89901 TGTTACCCTGGTCGTTCGCTATGATCTCGACGCCTTCGTTCTTCCATACACCCACGCAAG 89842 Query 8118 AATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || || || || | || || || | ||| Sbjct 89841 AGTATGTGGTGCCAAGGTCGATGCCAACTGC 89811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114563749480