Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq690 113 3e-20 seq1666 109 4e-19 >seq690 Length=59813 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||| |||| || || ||||||||||| || || ||| Sbjct 20040 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 20099 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| |||||||| || |||||||| || || || ||||| || | || Sbjct 20100 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 20159 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || || | | || | || | ||||||| Sbjct 20160 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 20219 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || ||||||||||| |||||||||||||| Sbjct 20220 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 Score = 89.7 bits (98), Expect = 3e-13 Identities = 175/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 34730 GGTACATATGCATATCCAATCATTTCCTCCCCTC--AACCTCAAAACCAAGTGAATTGTG 34787 || |||||| || ||||| ||||| || | |||| | | || |||||| |||| || Sbjct 19788 GGGACATATACA-ATCCA-TCATTGCC-CGCCTCGTAGACGCAGAACCAAATGAAGGGTT 19844 Query 34788 CTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 || ||||||||||| || || ||||| | | |||| |||||||| || |||||| Sbjct 19845 GACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCA 19904 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG 34907 || || || || ||||| || | || | || ||||| || ||||| || || Sbjct 19905 AAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACA 19964 Query 34908 GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | | || | || | |||||| || | || || || || || || ||||||||| Sbjct 19965 TTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTC 20024 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 20025 ACAAATATCTGCAT 20038 >seq1666 Length=111304 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| |||||||| ||||| ||||| || ||||| ||| | | |||| || Sbjct 109462 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 109521 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| || || || || || ||||| || |||| | || |||||||| Sbjct 109522 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 109581 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 || ||| || || || | ||||| | ||| | ||| || || | || ||||| Sbjct 109582 ATTTTCGCCTTTAC--AT--TTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGT 109637 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| |||||||| || ||||| ||||| ||||| || Sbjct 109638 TTTCCCCGTGAGGGTTTTCACGAAGATTTGCATTTT 109673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624511983816