Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1870 138 9e-27 seq690 102 7e-16 seq1086 95.1 1e-13 seq1666 91.5 1e-12 >seq1870 Length=140263 Score = 138 bits (152), Expect = 9e-27 Identities = 358/540 (66%), Gaps = 23/540 (4%) Strand=Plus/Plus Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069 || |||||||| ||| || ||||| ||| | || | || || || || || || Sbjct 89829 GGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAGATCATAGCGAAC 89888 Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129 || || ||||||||||| || || || ||||| | ||||| || || || | | || Sbjct 89889 GACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACAGAGCGACTGGTG 89948 Query 550130 GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAA 550189 || || || || ||| | || | | | || || || || ||||||| || || Sbjct 89949 GGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTTTTTGACGCGAAG 90008 Query 550190 CGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCT 550249 ||| | |||||| | | || |||| | | || ||| | || |||||||| ||||| Sbjct 90009 CGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATGAAGCACTGGCCG 90068 Query 550250 TTCCAAATTGTTAATGTTTCTGGAA---------AACCTTATATTGAAGCTACTCATGAA 550300 ||| | || || | |||||| | || |||||||| | | || Sbjct 90069 TTC---ACGGTCAAGG---CTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAACTACCAA 90122 Query 550301 GGATCTGTTA--AACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATG 550357 || || || || | |||||| || || ||||||| | ||||| | |||| ||| Sbjct 90123 GG---TGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGAAGATG 90179 Query 550358 AAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 || ||| ||| ||| | || ||||| ||||||||| ||| || || || || ||||| Sbjct 90180 AAGGAAATTGCCGAGT-CGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAGTACC 90238 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 ||||| || || || || || || || || || || || || || |||||| || || Sbjct 90239 GGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGGGTCT 90298 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||||||||| || || || ||||| ||||| || | || ||||| || || || Sbjct 90299 GAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGGACAA 90358 Score = 95.1 bits (104), Expect = 1e-13 Identities = 205/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 |||| || || | || |||| || | || || || ||||| || || || | ||||| Sbjct 90964 TACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTTGGAGACTGCTGGAG 91023 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 | | ||||| || | ||||| | || || || || || || || || | || | Sbjct 91024 GCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAAGAAGTCCCAGGTCT 91083 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || || |||| || || | | || |||||| | |||||||||||| | Sbjct 91084 TCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTTTGAAGGAGAACGTG 91143 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | || || ||||| || | | || | || | || || || || |||||||| | Sbjct 91144 CCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATGGAATCCCTCCTGCCC 91203 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 | ||||| || || ||||| ||||| || |||||||| ||||| ||||| || |||| | Sbjct 91204 CCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAAATGGCATCATGAACG 91263 Query 552583 TGACTGC 552589 | ||||| Sbjct 91264 TCACTGC 91270 >seq690 Length=59813 Score = 102 bits (112), Expect = 7e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| | ||| || || | ||||||||| || || ||| |||||||||| || || Sbjct 20045 CCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGT 20104 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || ||| || || || || ||||||||||| || | ||||||||||||||||| || Sbjct 20105 CCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCC 20164 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGA 563431 ||| ||||| || || ||| || || || || ||||| | || ||| || | Sbjct 20165 TTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA-TCCA 20223 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| || || ||||| || || || || ||||| Sbjct 20224 GAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||||||| || || ||| |||||||||| || || || Sbjct 19821 AGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG 19880 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || ||||||||||| || | ||||||||||||||||| ||||| Sbjct 19881 CCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 19940 Query 563377 TTATCTTGAATTTTT 563391 ||||| || || ||| Sbjct 19941 TTATCCTGGATCTTT 19955 >seq1086 Length=110894 Score = 95.1 bits (104), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 550387 AGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 |||||| | |||| || | ||||| || |||||||| ||||| ||||||| ||||| Sbjct 22372 AGAAGTAAAAAATGCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGC 22431 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 || || || || || || || || |||||||| | ||||| ||||||| || || Sbjct 22432 AACAAAGGACGCAGGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCAC 22491 Query 550507 TGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| ||||||||||| | || || Sbjct 22492 TGCGGCTGCTATTGCATATGGATTGGACAA 22521 >seq1666 Length=111304 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| || ||||| || || |||||||| | || || || ||| || | Sbjct 109464 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 109522 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | |||||||| || ||||| || | ||||||||||| ||||| ||||| || ||||| | Sbjct 109523 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 109582 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| ||||| || || ||||| | | | || || || || | ||||| Sbjct 109583 TTTTCGCCTTTACATTTTCGATGGTATCCG-AAGGCTCCACGTCCAGCGTGATGGTTTTC 109641 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| ||||| |||||||| Sbjct 109642 CCCGTGAGGGTTTTCACGAAGATTTGCAT 109670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029174524280530