Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_016770.1 Length=47159 Score E Sequences producing significant alignments: (Bits) Value seq1521 114 4e-21 >seq1521 Length=1535 Score = 114 bits (126), Expect = 4e-21 Identities = 313/470 (67%), Gaps = 21/470 (4%) Strand=Plus/Minus Query 3248 TTTATAGCCGGATGGCAGTTATAATTTACTATCTTAATATCTTCATACTTAAAATCGAAT 3307 || |||||||||||||| | ||||||| | | || ||| | | | |||||| || Sbjct 572 TTAATAGCCGGATGGCATTGATAATTTTCCAATACAAAATCATTGAAATCAAAATCAAAA 513 Query 3308 ATATTACGAACATTCGGGTTTAATTC-----CAATTTGGGAAGGGCGAACGGCTCTCTAC 3362 |||| | || ||||| |||| || ||| || | | ||||| | || | Sbjct 512 ATATG--GTCTAT---GGTTTTATTCAGGTACATTTTTGGTAACGGAAACGGATTCCTGC 458 Query 3363 TCAATTGTTCTTTCACCTGTTCAACGTGATTCAAATATATATGTCCGTCCCCGATAGTGT 3422 |||||||| || ||||||||| || || |||| ||| | || || | ||| | Sbjct 457 TCAATTGTAATTGGGCCTGTTCAATATGGTTATTGTATAAATGCACATCACCAAAAGTAT 398 Query 3423 GAATGAATCTACGAGGCTTTAAGCCGCAAACCTGCGCTACCATAGACAGCAAGATAGAAT 3482 |||| ||| || || | ||| | ||||||||||| | ||| | || | || || Sbjct 397 GAATAAATTCACCGGGTTGTAAATCACAAACCTGCGCAATCATTAAGGTTAACAAAGCAT 338 Query 3483 AAGACGCAATGTTGAAAGGAACGCCTAAAAATAGGTCTGCACTTCTTTGATACAGTTTCA 3542 |||| ||||| ||||| |||||||||||||||| || ||||| | |||||| || | Sbjct 337 AAGAGGCAATATTGAACGGAACGCCTAAAAATACATCAGCACTGCGTTGATATAGCTGGC 278 Query 3543 AATCCAAATAACCGGACTCAGACACATAGAACTGAAA-AAAGCAGTGGCACGGAGGAAGT 3601 | || | || | | |||||| |||||||| || ||| ||||| || | | Sbjct 277 AGCTTAATTGTCC---ATTGGCCACATAAAACTGAAACAATGCA-TGGCAGGGCATTAAT 222 Query 3602 GCCATCATGTGTATTTCTCCAACATTCCAAGCACTAACAATTAACCTTCTTGACT-TCGG 3660 ||||| | ||| || ||||||||| ||||| || ||||| | | |||| |||| Sbjct 221 GCCATTTTTGGTAAATCGGTAACATTCCATGCACTCACCATTAAACGCC--GACTATCGG 164 Query 3661 G-TTGAACTTAATCATATCTATAACTGAATCAATTTGATC--TACTCTTA 3707 | ||| | ||||| | ||| ||| | |||| || || |||| ||| Sbjct 163 GATTGTATTTAATTTGTTGTATTACTTCAGCAATCTGGTCAATACTTTTA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150783086996394