Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq690 141 7e-29 seq1666 111 1e-19 >seq690 Length=59813 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| || ||| | ||| ||||||||||| || || || || || |||||||| | Sbjct 19812 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 19871 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| |||| ||||| || ||||| || | |||||| ||||| || ||| Sbjct 19872 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 19931 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || ||| || ||| |||| | || || || | || || Sbjct 19932 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 19991 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| || ||||| || | ||| || ||||||||||||||| Sbjct 19992 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 20039 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || ||||| | ||| ||||||||||| || || || || || |||||||| | Sbjct 20040 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 20099 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| |||| ||||| || ||||| || | |||||| ||||| || ||| Sbjct 20100 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 20159 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || ||| || ||| |||| | || || || | || || Sbjct 20160 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 20219 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || ||||| | ||||| || || | ||| || ||||| |||||||| || Sbjct 20220 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATTGT 20269 >seq1666 Length=111304 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||| || || || |||||||| | || || || |||| || Sbjct 109462 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 109521 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || || || |||| |||||| ||||| |||||||||||||| || ||||| Sbjct 109522 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 109581 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| |||||| |||| | || || || | ||||| || || |||| ||||| Sbjct 109582 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 109641 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| || || || ||||| Sbjct 109642 CCCGTGAGGGTTTTCACGAAGATTTGCAT 109670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267306310029