Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq690 114 8e-20 seq1666 91.5 1e-12 >seq690 Length=59813 Score = 114 bits (126), Expect = 8e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || ||| ||| || || ||||| || |||||||| ||||| || Sbjct 20088 TTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGC 20147 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| |||||||| || || |||||| || ||| ||| || ||||| Sbjct 20148 TGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCT 20207 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || || || ||||| ||||| || ||||||||||| || || || || Sbjct 20208 GATGGCTCAA-CATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTG 20263 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | |||||| || || || || || ||||||| || || Sbjct 19818 CGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTC 19877 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| ||| || || ||||| || |||||||| ||||| || |||||||||||||| ||| Sbjct 19878 CTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCT 19937 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| || || |||||| || ||| ||| || ||||| | || | || | ||| Sbjct 19938 TCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAA- 19996 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || |||||||| || || || || Sbjct 19997 TGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTG 20035 >seq1666 Length=111304 Score = 91.5 bits (100), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || ||||| || | || ||||| | || || || ||| || | Sbjct 109464 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 109522 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | || |||||||| ||||| ||||| || |||||||| ||||| |||||||||||||| | Sbjct 109523 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 109582 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 | || || ||| ||| || ||||| | | || || || || ||||| | Sbjct 109583 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 109642 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || ||||| ||||| Sbjct 109643 CCGTGAGGGTTTTCACGAAGATTTG 109667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268080670524956