Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1870 437 1e-117 seq690 167 3e-36 seq1666 165 1e-35 seq1086 163 4e-35 >seq1870 Length=140263 Score = 437 bits (484), Expect = 1e-117 Identities = 1053/1582 (67%), Gaps = 15/1582 (1%) Strand=Plus/Plus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| ||||| | || || || ||||| || || ||||||||| | || || | || | Sbjct 89815 TTGGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCG 89874 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| || |||| ||||| || ||| | || || || || || || || || || || | Sbjct 89875 AGATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACA 89934 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || || || || || ||||| ||||| ||| || | |||||| || || | Sbjct 89935 CAGAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCG 89994 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 | ||||||||||||||||| ||||| || ||||| || || || || | Sbjct 89995 TTTTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACA 90054 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||||| | | || | || | | |||||| | ||| | || Sbjct 90055 TGAAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGA 90114 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | || |||| | ||| ||| ||| || |||||||| | |||||| || | | Sbjct 90115 ACTACCAAGGTGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 90174 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||| || || ||| | || ||| || || || || ||| | || | Sbjct 90175 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 90234 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 |||| || ||||||| ||||| || || ||||| ||||||||||| | ||||||||| Sbjct 90235 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 90294 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| |||| | || || || || || || || || || || || |||||||||| Sbjct 90295 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 90354 Query 195843 ACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| |||| | ||| ||||| | ||||| || | |||||||| || || Sbjct 90355 ACAAGAAG--GGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATT 90412 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || || | || || | || || || || || |||||||| |||||||| Sbjct 90413 TGATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGA 90472 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAGT 196019 ||| ||| | ||||| || || ||||| | || | | | | || || | || | Sbjct 90473 TACCCATTTGGGTGGAGAGGACTTCGACAACAGACTCGTG-GACTTCTGCATGCAGGATT 90531 Query 196020 TCCGTCGAAAGAAT--AAGAAAG-ATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 || || |||||| ||| ||| || || || || | ||||| | || || Sbjct 90532 TCAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGC 90591 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | ||| |||||| | || || || || ||||| | | || | | | |||| Sbjct 90592 GCACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGA 90651 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 | |||||| ||||||| || ||||| | | | || || |||| |||||||| || | Sbjct 90652 TCGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGG 90711 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 || | | |||| || |||| | | | | || || || | || | |||| Sbjct 90712 AGCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACG 90771 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 | || || ||| | || | || ||||| | || ||||| || |||||||||| Sbjct 90772 CTGCCATCGACAAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 90831 Query 196317 CGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAACGAT 196374 | |||||||| ||||| | || || ||||||||| | || || | | || Sbjct 90832 CCAAGATTCAGCAGAT--TATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 90889 Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434 |||||||||||| || || || || ||||| || || ||||| || |||||| ||||| Sbjct 90890 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 90949 Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 |||| | | || || ||||||||||| || || || || || | || || || | Sbjct 90950 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 91009 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| || | || || | ||||| || || || || || Sbjct 91010 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 91069 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||| || ||||| | || || | || || || ||||| || |||||||| | Sbjct 91070 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 91129 Query 196615 TGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 |||||||||||| | || || | ||||||||| | || | || | ||| | ||| | Sbjct 91130 TGAAGGAGAACG-TGCCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATG 91188 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | || || |||| ||| | || || || || || | || ||||||||| || |||| Sbjct 91189 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 91248 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 |||| || | |||||||| || || ||| |||| ||||| | |||| || Sbjct 91249 ATGGCATCATGAACGTCACTGCCACCGAAAAGAACACTGGGAAATCCAACCAGATCACGA 91308 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 |||| || || ||||| || || || || ||||| || || ||||| ||| || | Sbjct 91309 TTACGAACGATAAGGGCCGCCTGTCACAGAGTGAAATCGACCGCATGGTGGCAGAAGCTG 91368 Query 196854 AAAAGTACAGGGAAGAAGACGA 196875 | ||||||| || || ||||| Sbjct 91369 AGAAGTACAAGGCGGAGGACGA 91390 >seq690 Length=59813 Score = 167 bits (184), Expect = 3e-36 Identities = 177/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || || ||||| || || ||||| | || |||||| | ||| Sbjct 20038 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 19979 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 19978 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 19919 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| | || || ||||||||||| Sbjct 19918 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 19859 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGCAA 172093 |||| |||||||| || || || | ||||| | || || || || |||| Sbjct 19858 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGG-GCAA 19808 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || || ||||| || || || || |||||| | ||| Sbjct 20266 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 20207 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 20206 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 20147 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| | || || ||||||||||| Sbjct 20146 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 20087 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || || | ||||| Sbjct 20086 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 20055 >seq1666 Length=111304 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||||||||| || || ||||| ||||| || || || ||| | || Sbjct 109670 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 109611 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || || ||||| |||||||||||||| || |||||| Sbjct 109610 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 109551 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| |||||||| || ||||| | |||||| | ||||||||| Sbjct 109550 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 109491 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| ||||| ||| Sbjct 109490 ATCCAGAAGGAAAGCACTCTTCAC 109467 >seq1086 Length=110894 Score = 163 bits (180), Expect = 4e-35 Identities = 409/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| || ||| | || || |||||||| ||||| || || | | | | | || Sbjct 21980 ATTGGCATTGATCTCGGTACCACTTACTCGTGTGTGGGGGTGTACCGCCACGGAAGAGTT 22039 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||||| |||||||||||||||||||| | ||||| ||||| | ||| | ||| Sbjct 22040 GATATTATTCCGAATGACCAAGGAAACCGCATTACTCCTAGCTACGTGTCTTTTTCCGAT 22099 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 ||||| | |||| || || || || || | |||| ||||| ||||| Sbjct 22100 GATGAAAGGAAAATTGGGGAAGCTGCCAAGAACGACGCAGCCGATAACCCGTCAAATACC 22159 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 | || |||| |||||| || || || ||| || || |||| ||| ||| Sbjct 22160 ATTTTCGACGTGAAGCGCCTCATGGGGCGCCGTTTCAACGAGCCACAAGTGCAATCCGAC 22219 Query 195542 ATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATG 195599 || || |||| | ||||||| | || | | || ||||| |||| | Sbjct 22220 ATGAA--ACTGCTGCCTTATGAGATCATTAA---TAAAGATGGAAAGCCCTACATTAGAG 22274 Query 195600 TTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGA 195659 | | |||| || | |||| | ||||||| || || | || | ||||||||| Sbjct 22275 TCAATGTTCAGGGCCAACAGAAGGAGCTTGCTCCAGAGGAGGTGTCTGCCATGGTGTTGG 22334 Query 195660 TTAAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||| | || || | || | |||| | | || ||| |||| ||||| Sbjct 22335 GCAAGATGAAGCAAGTGGCCGAGAACTATT-TGGGAAGAGAAGTAAAAAATGCGGTTGTT 22393 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| || |||| |||| ||||||| || || ||||||||||| | || || Sbjct 22394 ACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCAGGCGCAATC 22453 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||||| || || ||| | | || ||||||| || || |||||||| ||||| ||||| Sbjct 22454 GCGGGGCTTAA-TGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATTGCATATGG 22512 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||| |||||| || || | | ||| ||| ||||| ||||||||||| Sbjct 22513 ATTGGACAAG---AAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGTGGTGGTAC 22566 Query 195898 GTTTGATGTCTC 195909 || |||||||| Sbjct 22567 CTTCGATGTCTC 22578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657843511125840