Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq963 179 1e-39 >seq963 Length=9630 Score = 179 bits (198), Expect = 1e-39 Identities = 297/425 (70%), Gaps = 8/425 (2%) Strand=Plus/Minus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 ||||| || ||| | || |||||| | || || |||| | || | ||| | ||| Sbjct 9308 TTGGCGAAACAGGTACCGGAAAAACACTGTTGGCCAAAACCATTGCAAAAATGCTGAATG 9249 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 ||||| | ||||| |||||||| || || ||||| |||||||| || ||||| | Sbjct 9248 TACCTTTTGCTATTGTAGATGCAACCGTATTTACCGAAGCAGGTTATGTTGGGGAAGACG 9189 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTG--ATTACGATATCGAATTAGCG-- 188952 | |||| | || | ||| | ||| | || |||| ||| | || | || Sbjct 9188 TAGAAAGTATGTTAACCAGATTACTTCAA--AATTGCAATTATGATGT--AACTGCCGCA 9133 Query 188953 GAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACA 189012 ||| || ||||| ||| | |||||| | ||||||||||| |||||| || | || Sbjct 9132 GAAAAAGGCATTGTGTATGTGGATGAAATTGATAAAATTGCCAGAAAAGGTGATAATCCA 9073 Query 189013 TCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAA 189072 || |||||||| ||||| |||||||| || || |||| |||||||||||| | ||| Sbjct 9072 TCTATTACCCGCGATGTGAGCGGCGAAGGTGTTCAACAAGGTTTATTAAAAATGCTGGAA 9013 Query 189073 GGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTT 189132 || |||| | | ||||| || || ||||| | ||||| ||| | ||| ||||| || Sbjct 9012 GGAACAGAGGTGTTGGTTCCACCACAGGGTGGGAGAAAACATCCTGAACAAAAAATGATT 8953 Query 189133 GAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAAC 189192 || ||||||||| ||||| || |||||| || || || ||||||||| |||| || Sbjct 8952 AAAGTAGATACAAAAAATATTTTATTTATTTGCGGCGGTGCTTTTGATGGTATTGATAAA 8893 Query 189193 ATTAT 189197 ||||| Sbjct 8892 ATTAT 8888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591863549579456