Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq690 118 1e-21 seq1999 100 3e-16 seq1666 100 3e-16 >seq690 Length=59813 Score = 118 bits (130), Expect = 1e-21 Identities = 154/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 19833 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 19889 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 19890 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 19949 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| ||||| | |||| || ||| Sbjct 19950 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 20009 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||||||| || || || ||||||||| Sbjct 20010 CCAGTCAGAGTCTTCACAAATATCTGCATG 20039 Score = 107 bits (118), Expect = 2e-18 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 20061 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 20117 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 20118 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 20177 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| || || | || | |||||| Sbjct 20178 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTC 20237 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || |||||||| Sbjct 20238 CCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 >seq1999 Length=46803 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| | |||||||| || ||| || || | ||||||| ||||| ||| |||| Sbjct 33858 GAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGCAGCAC 33917 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 ||||| || || || | |||| ||| | || |||||||| |||||||| |||||| Sbjct 33918 AGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATGCGTCC 33977 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 ||||||| |||||| || ||| ||||| | ||||| || || Sbjct 33978 TTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCA 34020 >seq1666 Length=111304 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||| || || ||| |||| || |||||||| || || || |||||||||||| Sbjct 109516 TCCTCGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTG 109575 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | || || | ||||||||||| | |||| | Sbjct 109576 TCTTGGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATG 109635 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| || ||||| Sbjct 109636 GTTTTCCCCGTGAGGGTTTTCACGAAGATTTGCAT 109670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406919780280