Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq690 105 6e-18 >seq690 Length=59813 Score = 105 bits (116), Expect = 6e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| |||| |||||||| | || || || || ||||| ||||| || Sbjct 20038 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 20097 Query 27079 TCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || | || || ||||| || ||||| ||||||||||||| ||||| || Sbjct 20098 AAAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGA 20156 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTC 27196 || | || || ||||| |||||| |||| |||| | || |||| |||| || Sbjct 20157 GGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGC-TC 20215 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||| || | ||| || || ||||| || |||||||| ||||| Sbjct 20216 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 20266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 27014 ATTATTGCCT-CCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072 || |||||| || || | |||| |||||||| | || || || || ||||| |||| Sbjct 19804 ATCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGT 19863 Query 27073 AGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 | || | ||| || | || || ||||| || ||||| ||||||||||||| ||| Sbjct 19864 AATCAGAAAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGA 19922 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-T 27190 || || || | || || ||||| |||||| |||| |||| | || |||| | Sbjct 19923 TCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGAT 19982 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || | || || | ||||| |||||||| |||||||| || ||||| Sbjct 19983 GGC-TCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 20038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424922504094264