Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1870 282 1e-70 seq690 170 6e-37 seq1666 131 5e-25 seq1086 96.9 1e-14 seq1991 89.7 2e-12 seq1200 86.0 2e-11 >seq1870 Length=140263 Score = 282 bits (312), Expect = 1e-70 Identities = 940/1447 (65%), Gaps = 19/1447 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | || || || || ||||| || | ||| ||| | || || | || || Sbjct 89817 GGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAG 89876 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 89877 ATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACA 89936 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| || | || || | || ||||| || | || || || |||| || ||| Sbjct 89937 GAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTT 89996 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||| || ||||| || ||||| | | || |||| | || || || | Sbjct 89997 TTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATG 90056 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || || || | | ||| | ||| ||| ||||||| || | Sbjct 90057 AAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAAC 90116 Query 349505 TATAAAGGTGA-ACAAAAACAATTTTTACCCGAAG-AAATTTCATCAATGGTTTTAGTTA 349562 || |||||| || || || |||| | ||| || ||||||| | ||||| | || | Sbjct 90117 TACCAAGGTGCTACGAAGAC--TTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 90174 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | |||||||||||||| || | | | || || ||| | || || |||||||| | Sbjct 90175 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 90234 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 |||| || || || || ||| | ||||| || ||||| || || |||| ||||||| Sbjct 90235 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 90294 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || ||||| | || ||||| || || || |||||||| || || ||||| || | Sbjct 90295 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 90354 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | |||| ||| | || || || || | |||||||| || |||| Sbjct 90355 ACAAGAAGGGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATTTG 90414 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || || || || ||||| || || || || |||||||||| Sbjct 90415 ATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGATA 90474 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG--TTAAAGAATT 349920 | ||| | |||||||| || || || || | |||| | | || || | | || || Sbjct 90475 CCCATTTGGGTGGAGAGGACTTCGACAACAGACTCG--TGGACTTCTGCATGCAGGATTT 90532 Query 349921 TAAGCG--TCAAGCTAA-AATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || | || | ||| || | | || | || | | ||||| | Sbjct 90533 CAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGCG 90592 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||| ||||| | || ||||| || | || | ||||| || | || || || Sbjct 90593 CACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGAT 90652 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| || ||| |||| |||| | |||| || | || || || || || || Sbjct 90653 CGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGGA 90712 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || |||||| || || | | | || ||||| || || || || || || Sbjct 90713 GCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACGC 90772 Query 350158 AAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 || | || ||| || | || || || || || || || ||||| ||||||| Sbjct 90773 TGCCATCGAC-AAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 90831 Query 350217 CAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 | || |||| ||| | |||| ||||| || |||| ||| || || | | || || Sbjct 90832 CCAAGATTCAGCAG--ATTATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 90889 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| || || ||||| |||||||| || ||||| | ||| | || Sbjct 90890 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 90949 Query 350335 TAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATT 350394 || | ||| | | | ||||| | || ||||| ||| | ||||| |||||||| || Sbjct 90950 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 91009 Query 350395 AGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAA 350454 || ||| |||| | || ||||| | || | || | || | || || || Sbjct 91010 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 91069 Query 350455 AAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATT 350514 |||||||| || | || | ||||| || ||||||| || |||||||| || Sbjct 91070 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 91129 Query 350515 TGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG-TG 350573 |||||| |||||||| || || ||||| || ||||| || || | || | || Sbjct 91130 TGAAGGAGAACGTGCCATGACCAAGGATAACAA-CCTCTTGGGCAAGTTCCACTTGGATG 91188 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 ||| || || || | || || ||||| || |||||| | |||||||||||| ||| Sbjct 91189 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 91248 Query 350634 ATGGTAT 350640 |||| || Sbjct 91249 ATGGCAT 91255 >seq690 Length=59813 Score = 170 bits (188), Expect = 6e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| || ||||| || ||||| || |||||||| | ||| | ||||| Sbjct 19827 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 19886 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || ||||| || ||||| ||||||||||||||||| ||||| |||||| Sbjct 19887 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 19946 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| ||||| ||||| || | ||| | |||| Sbjct 19947 TGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTC 20006 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 20007 TTGCCAGTCAGAGTCTTCACAAATATCTGCAT 20038 Score = 170 bits (188), Expect = 6e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | ||||| | |||||| || ||||| || ||||| || ||||| Sbjct 20036 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 20095 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| | ||||| || || || || || ||||| || ||||| ||||||||||| Sbjct 20096 AGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 20155 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || || || ||||| || || | ||| ||||| || Sbjct 20156 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 20215 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||| || || |||| || || || || || || || ||||| ||||||||| Sbjct 20216 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 20267 >seq1666 Length=111304 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| || || || || || ||||| || | || | |||||| || | Sbjct 109464 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 109522 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||||||||| || || ||||| ||||||||||| ||||| ||||| || || || | Sbjct 109523 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 109582 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 |||| || |||||||| || || | ||| || || || || || || || | || || | Sbjct 109583 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 109642 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||| || || || |||||| Sbjct 109643 CCGTGAGGGTTTTCACGAAGATTTGCATT 109671 >seq1086 Length=110894 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 ||||| || | || |||||| || | || || ||||| || | ||||| || Sbjct 22325 ATGGTGTTGGGCAAGATGAAGCAAGTGGCCGAGAACTATTTGGGAAGAGAAGTAAAAAAT 22384 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 22385 GCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCA 22444 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| || |||||| | ||||| | | || | ||||| |||||||| || || ||| Sbjct 22445 GGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATT 22504 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 |||||||| | || || || ||| || || | ||| | | | ||| | ||| Sbjct 22505 GCATATGGATTGGACAA---GAAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGT 22558 Query 349790 GGTGGTACTTTTGATGTATC 349809 |||||||| || ||||| || Sbjct 22559 GGTGGTACCTTCGATGTCTC 22578 >seq1991 Length=19435 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || ||| || || Sbjct 7693 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCAAGTCCGCG 7752 Query 423824 TGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||||| |||||| |||||||| Sbjct 7753 TGGGTTCAAATCCCACTTCGTGCATT 7778 >seq1200 Length=113763 Score = 86.0 bits (94), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGC---GAAAGCCT 423821 |||| ||||||||||||||| |||||||| |||||||| || |||| ||| || Sbjct 80268 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGTTCCCCTGGTCGTGAAGACCG 80210 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||| |||||||||||||||||| Sbjct 80209 CGTGGGTTCGAACCCCACTCCGTGCATT 80182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515209805589491