Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq690 163 3e-35 seq1666 138 1e-27 seq1999 107 2e-18 seq1528 95.1 1e-14 >seq690 Length=59813 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || || || |||||||| || |||||| || Sbjct 20267 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 20208 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || || Sbjct 20207 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 20148 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 20147 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 20088 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 20087 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 20040 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || |||||| || Sbjct 20038 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 19979 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 19978 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 19919 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 19918 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 19859 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || ||||| || || |||||| | || ||||||| || || || ||| Sbjct 19858 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGGGCAA 19808 >seq1666 Length=111304 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || || || || || || || || || ||| | Sbjct 109671 AATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTC 109612 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| ||||| || |||||||| || ||||| || || || Sbjct 109611 GGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCA 109552 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| ||||| || || |||||||||| | ||||| | || || || Sbjct 109551 GCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAA 109492 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||| ||||||||| Sbjct 109491 CATCCAGAAGGAAAGCACTCTTCA 109468 >seq1999 Length=46803 Score = 107 bits (118), Expect = 2e-18 Identities = 244/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGC 80783 || || || || || || || | | |||| |||||||| ||| ||| | | || ||| Sbjct 33669 TCCGCGAGCCCTTGCACACCCAAGCCGATGGGGCGGTGTCGCAGGTTGCTGTAGCG-GGC 33727 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 || || | ||||| | || |||||||||| |||||||| || || || | ||| Sbjct 33728 TTCTGGGACGGGGTAGTAATTTCTATCGATGACACGGTTCAGATTCCGAGTCATGACCTT 33787 Query 80844 TGTAACATC-ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA------AATGCCG 80896 |||| | |||| | ||| |||||||| | ||| || ||| ||| | Sbjct 33788 CACAACAGCCATGA-GCTTCGCGAAGTCGAAGAGCTTCTTCTCGACATCCACGAATCGAG 33846 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 | || || ||| |||| |||||||| || ||||| || | | || |||| |||| Sbjct 33847 GGAGAGACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGA 33906 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 |||| ||||| |||| || ||| | |||| ||||| |||||| ||| || Sbjct 33907 TTTCGCAGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGT 33966 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 |||| ||||||||||| |||||| ||||| || || |||| ||| || | ||||| | Sbjct 33967 TGCATGCGTCCTTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCAGGATAG 34026 Query 81077 CG 81078 || Sbjct 34027 CG 34028 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||||| | |||||| |||||||||||||| || ||||| ||| | |||| Sbjct 32615 GCCTGCGTCCTTAAATAGTAAATGCCCGTCTTGAGTCCGGAATTCCACGCGTGGAAGTGC 32674 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | ||||||||| | ||||| ||| |||| ||| || | |||||| ||||| Sbjct 32675 ATCGTCGAGAGCTTCGCGAAAGTGGGATTCCGCATGTGGATATTTAAAGACTGGGACTGG 32734 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT--TG-ACTTTTGTGGAATTTCC 80208 | ||| | | | |||||| ||||||| |||| ||| || || | | || ||| Sbjct 32735 TCTACGAAGGGCGCGCGATCTACCGCCATATCAACAATGCTGCGCTGCTTT---ATCTCC 32791 Query 80209 CATACTGTACGATACACCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || || ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 32792 CAAACCGTGCGATAAAGCTCCTTTAGATCGTCCGGAATCTCTGCCAGATGCTGCACGCTG 32851 Query 80266 CC 80267 || Sbjct 32852 CC 32853 >seq1528 Length=162532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 265/405 (65%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCG 32061 |||||||| ||| | | ||| | ||||||||||| | | || ||||||||||| Sbjct 41637 CAGCGCAAAGTGCTGTTTGCCGTCTTCAAGAAGAACACGAAGGCCGAGCTGAAGGTGGCG 41696 Query 32062 CAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAG 32121 || || || || || || || ||||| | || ||||||||||||||| ||| | ||| Sbjct 41697 CAACTCTCTGGGTATGTTGCCGAGCAGAGTGCGTATCACCACGGCGAGCAGTCTTTGCAG 41756 Query 32122 GGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAG 32181 ||||| | | | | || ||| || || || || || || || || || ||| Sbjct 41757 CAAACCATCATTACCATGGCCCAGCGGTTCGTTGGAAGCAACAATCTTAATTTCCTTGAG 41816 Query 32182 CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTAC 32241 || ||| ||||| || || | | || || |||||||| | |||| ||| Sbjct 41817 CCCGTTGGTCAGTTCGGATCCAGAAAAGAGGGCGGGAAGGATGCGTCTGCACCCCGCTAC 41876 Query 32242 ATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG--TCGGACGATGCGG 32299 ||||| || |||||||| | || ||| ||||| |||| | || || | Sbjct 41877 ATCTTTACAAAGCTCGCACCGTACACACGCCTCGTTTTC--CCCGAAGCCGATGACCCTC 41934 Query 32300 TGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGC 32359 ||||| ||||| | ||| || || ||| | |||||||| | |||| ||| || Sbjct 41935 TGCTCGAGTACCTCTATGAGGAGGGGCAGAAGATCGAGCCGAAATACTACGTTCCTGTCA 41994 Query 32360 TTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGGGT 32404 | || | | | || ||||| ||||||||||| ||||||| Sbjct 41995 TCCCCACCGTGCTTGTCAACGGCAGCGAAGGCATCGGCACGGGGT 42039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294024962640