Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq1521 132 4e-26 >seq1521 Length=1535 Score = 132 bits (146), Expect = 4e-26 Identities = 311/461 (67%), Gaps = 19/461 (4%) Strand=Plus/Minus Query 125925 TATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAATCT 125984 || || || || |||||||||||||| || || ||| ||||||| |||| | ||||| Sbjct 590 TAAACAGCTATTGGTGCTTTAATAGCCGGATGGCATTGATAATTTTCCAATACAAAATCA 531 Query 125985 TCATAATTAATATCAAAAAT-TGATTTATC--TGTATTAATTTTTAATTGAGGT---GGT 126038 | ||| || ||||||||| || | ||| | |||| | | | || ||| || Sbjct 530 TTGAAATCAAAATCAAAAATATGGTCTATGGTTTTATTCAGGTACATTTTTGGTAACGGA 471 Query 126039 A---GATAACTA-TCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAAT 126094 | ||| || || ||| |||||| | ||| || ||||| || || | Sbjct 470 AACGGATTCCTGCTCAATTG-TAATTGGGCCTGT------TCAATATGGTTATTGTATAA 418 Query 126095 ATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAA- 126153 ||| |||| ||||| |||||||| |||||||| | | |||| | | |||| Sbjct 417 ATGCACATCACCAAAAGTATGAATAAATTCACCGGGTTGTAAATCACAAACCTGCGCAAT 358 Query 126154 CAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAG 126213 || | | || | ||||||||| ||||||||||| ||||| |||||||||| ||||| Sbjct 357 CATTAAG-GTTAACAAAGCATAAGAGGCAATATTGAACGGAACGCCTAAAAATACATCAG 299 Query 126214 CACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTG 126273 |||| | |||||||| || || |||||| || | || ||||| ||||||| || Sbjct 298 CACTGCGTTGATATAGCTGGCAGCTTAATTGTCCATTGGCCACATAAAACTGAAACAATG 239 Query 126274 TGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGT 126333 ||||| || |||||||||| | || ||| ||||||||| || || Sbjct 238 CATGGCAGGGCATTAATGCCATTTTTGGTAAATCGGTAACATTCCATGCACTCACCATTA 179 Query 126334 GACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACT 126374 ||| ||| | |||||| ||||||||||||||| ||| Sbjct 178 AACGCCGACTATCGGGATTGTATTTAATTTGTTGTATTACT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586961415479