Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq690 179 9e-40 seq1666 143 6e-29 >seq690 Length=59813 Score = 179 bits (198), Expect = 9e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 20064 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 20123 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| |||||||| |||||||||||| Sbjct 20124 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 20183 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| ||||||||||| || || ||||| || ||||| || || || || ||| Sbjct 20184 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTG 20243 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 20244 AGAGTCTTGACAAAGATCTGCATT 20267 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 19836 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 19895 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| |||||||| |||||||||||| Sbjct 19896 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 19955 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| ||||||||||| || || ||||| || | ||||| ||||| || || Sbjct 19956 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTC 20015 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| | |||||| Sbjct 20016 AGAGTCTTCACAAATATCTGCAT 20038 >seq1666 Length=111304 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||| || || |||||||| ||||||| |||||||| ||||| || ||||| Sbjct 109467 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 109526 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || || || || || ||||| |||| ||||||||||| ||||| || Sbjct 109527 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 109586 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||||||||| || || || || || || ||||| || || ||||| Sbjct 109587 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 109646 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || || | |||||||| Sbjct 109647 GAGGGTTTTCACGAAGATTTGCATTTT 109673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159117885794405