Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1666 152 1e-31 seq2182 118 3e-21 >seq1666 Length=111304 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| |||||| ||| || |||| |||||||| | | || |||||||| || ||||| Sbjct 109467 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 109526 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || |||||||| || || || || || || |||||||| ||||||||||||||||| || Sbjct 109527 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 109586 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||||||| || || | |||||||| | |||||| || || ||||| Sbjct 109587 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 109646 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| | ||| | ||||||||| Sbjct 109647 GAGGGTTTTCACGAAGATTTGCATTTT 109673 >seq2182 Length=5127 Score = 118 bits (130), Expect = 3e-21 Identities = 103/127 (81%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| |||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 4443 TGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 4384 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| |||||||| || ||| || |||| Sbjct 4383 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTACTCAGGCGGGATACTTAACGC 4324 Query 7855 GTTAGCT 7861 ||||||| Sbjct 4323 GTTAGCT 4317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192496103434118